RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 NENFQ9UMX5 172 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 SIGLEC16A6NMB1 481 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 KCNU1A8MYU2 1149 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.94□□□□□ -0.34
SKA1-203ENST00000417656 TRIM24O15164 1050 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 NCAM2O15394 837 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 CCP110O43303 1012 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 ADCY5O95622 1261 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 SLC2A3P11169 496 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 PDGFRAP16234 1089 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 ABCB4P21439 1286 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 RDXP35241 583 aaKnown RBP12.94□□□□□ -0.34
SKA1-203ENST00000417656 EIF2DP41214 584 aaKnown RBP12.94□□□□□ -0.34
SKA1-203ENST00000417656 PTPN9P43378 593 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 CXCR3P49682 368 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 RPL7AP62424 266 aaKnown RBP12.94□□□□□ -0.34
SKA1-203ENST00000417656 GFPT1Q06210 699 aaPredicted RBP12.94□□□□□ -0.34
SKA1-203ENST00000417656 PPP2R5DQ14738 602 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 TSR1Q2NL82 804 aaKnown RBP12.94□□□□□ -0.34
SKA1-203ENST00000417656 CCDC14Q49A88 953 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 MPPE1Q53F39 396 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 SH3PXD2AQ5TCZ1 1133 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 PIK3R6Q5UE93 754 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 GRAMD4Q6IC98 578 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 PLEKHA7Q6IQ23 1121 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 FAM131BQ86XD5 332 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 DRC7Q8IY82 874 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 PHTF2Q8N3S3 785 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 ATP6V0D2Q8N8Y2 350 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 DDI1Q8WTU0 396 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 EXOC4Q96A65 974 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 AZIN2Q96A70 460 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 CLDN23Q96B33 292 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 TRIM11Q96F44 468 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 PGAP3Q96FM1 320 aaPredicted RBP12.94□□□□□ -0.34
SKA1-203ENST00000417656 VCPIP1Q96JH7 1222 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 BTN2A3PQ96KV6 586 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 XPO6Q96QU8 1125 aaKnown RBP12.94□□□□□ -0.34
SKA1-203ENST00000417656 PNKPQ96T60 521 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 CHP1Q99653 195 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 ISCUQ9H1K1 167 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 CHRDQ9H2X0 955 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 DEF6Q9H4E7 631 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 ANLNQ9NQW6 1124 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 ARHGEF4Q9NR80 690 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.94□□□□□ -0.34
SKA1-203ENST00000417656 MYO1AQ9UBC5 1043 aa12.94□□□□□ -0.34
SKA1-203ENST00000417656 SSU72P8A0A1W2PR75 194 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 ANKRD62A6NC57 917 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 ANTXRLA6NF34 631 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 I6L893 689 aaPredicted RBP12.93□□□□□ -0.34
SKA1-203ENST00000417656 RNF40O75150 1001 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 KAT7O95251 611 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 APODP05090 189 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 MYBL1P10243 752 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 TACR2P21452 398 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 DRD1P21728 446 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 HOXD9P28356 352 aaPredicted RBP12.93□□□□□ -0.34
SKA1-203ENST00000417656 RPS9P46781 194 aaKnown RBP12.93□□□□□ -0.34
SKA1-203ENST00000417656 OGDHQ02218 1023 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 MAMLD1Q13495 774 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 MS4A13Q5J8X5 152 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 DGKKQ5KSL6 1271 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 BRMS1LQ5PSV4 323 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 CCDC122Q5T0U0 273 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 ALKBH5Q6P6C2 394 aaKnown RBP12.93□□□□□ -0.34
SKA1-203ENST00000417656 DCUN1D2Q6PH85 259 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 SND1Q7KZF4 910 aaKnown RBP eCLIP12.93□□□□□ -0.34
SKA1-203ENST00000417656 LGI2Q8N0V4 545 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 TERB1Q8NA31 727 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 DTWD2Q8NBA8 298 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 HJURPQ8NCD3 748 aaPredicted RBP12.93□□□□□ -0.34
SKA1-203ENST00000417656 FAM172AQ8WUF8 416 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 PRMT1Q99873 361 aaKnown RBP12.93□□□□□ -0.34
SKA1-203ENST00000417656 DDX50Q9BQ39 737 aaKnown RBP12.93□□□□□ -0.34
SKA1-203ENST00000417656 TKTL2Q9H0I9 626 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 THAP2Q9H0W7 228 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 TMPRSS4Q9NRS4 437 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 SPTLC3Q9NUV7 552 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 PARVAQ9NVD7 372 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 ARHGEF38Q9NXL2 777 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 DEC1Q9P2X7 70 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 CLEC4EQ9ULY5 219 aa12.93□□□□□ -0.34
SKA1-203ENST00000417656 F5H5T6 163 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 AKR1B10O60218 316 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 TBL1XO60907 577 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 PAGE1O75459 146 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 F9P00740 461 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 CDC25BP30305 580 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 MAGEA9P43362 315 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 DGKGP49619 791 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 ZNF143P52747 638 aaPredicted RBP12.92□□□□□ -0.34
SKA1-203ENST00000417656 SEC13P55735 322 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 RPS24P62847 133 aaKnown RBP12.92□□□□□ -0.34
SKA1-203ENST00000417656 ZNF252P-AS1Q0IIN9 211 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 GAS6Q14393 721 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 SLC18A3Q16572 532 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 ASTE1Q2TB18 679 aaPredicted RBP12.92□□□□□ -0.34
SKA1-203ENST00000417656 PKN3Q6P5Z2 889 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 STRADAQ7RTN6 431 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms