RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 CYP1A1P04798 512 aaPredicted RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 DLDP09622 509 aaKnown RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 ZNF806P0C7X5 589 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 POLR2EP19388 210 aaKnown RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 MMP8P22894 467 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 TIE1P35590 1138 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 FNTBP49356 437 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 CXCR3P49682 368 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 ZNF135P52742 658 aaPredicted RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 POLR2FP61218 127 aaKnown RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 ST8SIA6P61647 398 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 SLC20A2Q08357 652 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 CCDC15Q0P6D6 951 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 NR1I3Q14994 352 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 ACAP1Q15027 740 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 CSRP2Q16527 193 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 ARL13BQ3SXY8 428 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 ANO6Q4KMQ2 910 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 MS4A13Q5J8X5 152 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 OR6B2Q6IFH4 312 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 CAVIN1Q6NZI2 390 aaKnown RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 OLFML1Q6UWY5 402 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 LRRC31Q6UY01 552 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 ZNF783Q6ZMS7 281 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 Q6ZS52 159 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 STRADAQ7RTN6 431 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 ASCL5Q7RTU5 278 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 SLC47A2Q86VL8 602 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 PHF13Q86YI8 300 aaPredicted RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 DRC7Q8IY82 874 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 CHPFQ8IZ52 775 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 DEFB106AQ8N104 65 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 NAT16Q8N8M0 369 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 TXNDC5Q8NBS9 432 aaKnown RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 CEP76Q8TAP6 659 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 EPS8L1Q8TE68 723 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 EZH1Q92800 747 aaPredicted RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 FOXJ1Q92949 421 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 RNF34Q969K3 372 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 TTC17Q96AE7 1141 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 FCRL2Q96LA5 508 aaPredicted RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 CPXM1Q96SM3 734 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 NPY6RQ99463 290 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 LSM14BQ9BX40 385 aaKnown RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 ITM2CQ9NQX7 267 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 VPS45Q9NRW7 570 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 TAB2Q9NYJ8 693 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 AIPL1Q9NZN9 384 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 LCMT1Q9UIC8 334 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 SMG5Q9UPR3 1016 aaKnown RBP6.63□□□□□ -1.35
USP54-202ENST00000413442 NAALADL1Q9UQQ1 740 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 FHOD1Q9Y613 1164 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 R4GN57 208 aa6.63□□□□□ -1.35
USP54-202ENST00000413442 ATG2BQ96BY7 2078 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 A0A1B0GTH6 734 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 A0A1B0GVM2 712 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 A0A1W2PQJ5 194 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 TCAF2A6NFQ2 919 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 SIGLEC16A6NMB1 481 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 PRRT4C9JH25 899 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 F5H5T6 163 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 H0Y626 953 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 M0QYT0 321 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 MDM4O15151 490 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 MAP3K13O43283 966 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 RNASEH1O60930 286 aaKnown RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 GFPT2O94808 682 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 LUC7L3O95232 432 aaKnown RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 KLF8O95600 359 aaPredicted RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 IGLV3-19P01714 112 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 HMBSP08397 361 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 ATXN8OSP0DMR3 200 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 PABPC1P11940 636 aaKnown RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 UNGP13051 313 aaPredicted RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 HOXB2P14652 356 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 TNFAIP3P21580 790 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 HOXD9P28356 352 aaPredicted RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 HTR7P34969 479 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 ETFBP38117 255 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 P2RY2P41231 377 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 PRKCIP41743 596 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 PTPN9P43378 593 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 NSFP46459 744 aaKnown RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 LIMK1P53667 647 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 NOMO3P69849 1222 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 NRG1Q02297 640 aaPredicted RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 CENPCQ03188 943 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 IQCB1Q15051 598 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 SYPL2Q5VXT5 272 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 GJB7Q6PEY0 223 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 TSSK4Q6SA08 328 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 LRSAM1Q6UWE0 723 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 CHST9Q7L1S5 443 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 LPCAT2Q7L5N7 544 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 APTXQ7Z2E3 356 aaKnown RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 ERMP1Q7Z2K6 904 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 SETD3Q86TU7 594 aaPredicted RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 KBTBD6Q86V97 674 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 VPS36Q86VN1 386 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms