RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ZNF234Q14588 700 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 ZC3H12AQ5D1E8 599 aaKnown RBP19.8■□□□□ 0.76
SF3A1-202ENST00000411423 OTUD1Q5VV17 481 aaPredicted RBP19.8■□□□□ 0.76
SF3A1-202ENST00000411423 SMYD5Q6GMV2 418 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 OR6B2Q6IFH4 312 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 KIAA0907Q7Z7F0 614 aaPredicted RBP19.8■□□□□ 0.76
SF3A1-202ENST00000411423 GPR161Q8N6U8 529 aaKnown RBP19.8■□□□□ 0.76
SF3A1-202ENST00000411423 AZIN2Q96A70 460 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 STK33Q9BYT3 514 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 SLC2A11Q9BYW1 496 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 ELOVL2Q9NXB9 296 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 BCCIPQ9P287 314 aaKnown RBP eCLIP19.8■□□□□ 0.76
SF3A1-202ENST00000411423 PLXND1Q9Y4D7 1925 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 MMEP08473 750 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 PRKCHP24723 683 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 CD70P32970 193 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 SLC11A2P49281 568 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 RPS24P62847 133 aaKnown RBP19.79■□□□□ 0.76
SF3A1-202ENST00000411423 C2CD6Q53TS8 623 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 DCAF6Q58WW2 860 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 TCEAL6Q6IPX3 200 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 ADIPOR2Q86V24 386 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 PGBD3Q8N328 593 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.79■□□□□ 0.76
SF3A1-202ENST00000411423 EPS8L1Q8TE68 723 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 SLC20A1Q8WUM9 679 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 TCEAL3Q969E4 200 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 FAM207AQ9NSI2 230 aaPredicted RBP19.79■□□□□ 0.76
SF3A1-202ENST00000411423 ABCB8Q9NUT2 735 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 ASNSD1Q9NWL6 643 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 STIM2Q9P246 746 aa19.79■□□□□ 0.76
SF3A1-202ENST00000411423 RALGAPA1Q6GYQ0 2036 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 ATP1A3P13637 1013 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 TFE3P19532 575 aaPredicted RBP19.78■□□□□ 0.76
SF3A1-202ENST00000411423 MPLP40238 635 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 JAM2P57087 298 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 POLR2FP61218 127 aaKnown RBP19.78■□□□□ 0.76
SF3A1-202ENST00000411423 FUT11Q495W5 492 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 MS4A13Q5J8X5 152 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 CFAP52Q8N1V2 620 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 AOPEPQ8N6M6 819 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 CYB5D2Q8WUJ1 264 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 CIPCQ9C0C6 399 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 NLRC4Q9NPP4 1024 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 GGA2Q9UJY4 613 aa19.78■□□□□ 0.76
SF3A1-202ENST00000411423 NOCTQ9UK39 431 aaKnown RBP19.78■□□□□ 0.76
SF3A1-202ENST00000411423 THADAQ6YHU6 1953 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 TNRC6BQ9UPQ9 1833 aaKnown RBP19.77■□□□□ 0.76
SF3A1-202ENST00000411423 SYNJ2BP-COX16A0A087WUM0 186 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 BCLAF3A2AJT9 711 aaKnown RBP19.77■□□□□ 0.76
SF3A1-202ENST00000411423 LGALS16A8MUM7 142 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 GFPT2O94808 682 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 GLI1P08151 1106 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 CHRNB2P17787 502 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 BPIFB4P59827 614 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 ZNF445P59923 1031 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 SLC6A3Q01959 620 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 LMNB2Q03252 620 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 SYCP1Q15431 976 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 ELF2Q15723 593 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 PTPRNQ16849 979 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 FSCBQ5H9T9 825 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 MPP7Q5T2T1 576 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 RAP1GAP2Q684P5 730 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 SDE2Q6IQ49 451 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 TRNP1Q6NT89 227 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 MMS22LQ6ZRQ5 1243 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 CHST9Q7L1S5 443 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 SLC26A9Q7LBE3 791 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 TMEFF1Q8IYR6 380 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 MRGPRX1Q96LB2 322 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 PRMT1Q99873 361 aaKnown RBP19.77■□□□□ 0.76
SF3A1-202ENST00000411423 MKRN2Q9H000 416 aaKnown RBP19.77■□□□□ 0.76
SF3A1-202ENST00000411423 COX16Q9P0S2 106 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 INTS6Q9UL03 887 aaKnown RBP19.77■□□□□ 0.76
SF3A1-202ENST00000411423 CEP250Q9BV73 2442 aa19.77■□□□□ 0.76
SF3A1-202ENST00000411423 IGHV1OR15-9A0A0B4J2B8 117 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.76■□□□□ 0.75
SF3A1-202ENST00000411423 LRRC10BA6NIK2 292 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 KCNU1A8MYU2 1149 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 HSF2BPO75031 334 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 DAB1O75553 588 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 RHOBTB1O94844 696 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 ZNF806P0C7X5 589 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 PABPC1P11940 636 aaKnown RBP19.76■□□□□ 0.75
SF3A1-202ENST00000411423 HLA-EP13747 358 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 PTGER3P43115 390 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 GABRB2P47870 512 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 ATXN1P54253 815 aaKnown RBP19.76■□□□□ 0.75
SF3A1-202ENST00000411423 NOMO3P69849 1222 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 CREB5Q02930 508 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 LMAN2Q12907 356 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 EIF4HQ15056 248 aaKnown RBP19.76■□□□□ 0.75
SF3A1-202ENST00000411423 ANO6Q4KMQ2 910 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 EFHC1Q5JVL4 640 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 CAVIN1Q6NZI2 390 aaKnown RBP19.76■□□□□ 0.75
SF3A1-202ENST00000411423 ARMCX6Q7L4S7 300 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 XYLT1Q86Y38 959 aa19.76■□□□□ 0.75
SF3A1-202ENST00000411423 DEFB119Q8N690 84 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms