RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 APOC2P02655 101 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 ABL2P42684 1182 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 OCRLQ01968 901 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 OASLQ15646 514 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 CARTPTQ16568 116 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 C11orf91Q3C1V1 193 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 EFHC1Q5JVL4 640 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 RBM44Q6ZP01 1051 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 NCCRP1Q6ZVX7 275 aaPredicted RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 CDKL3Q8IVW4 592 aaPredicted RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 ULK2Q8IYT8 1036 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 C7orf43Q8WVR3 580 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 SLC7A6OSQ96CW6 309 aaPredicted RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 HDAC11Q96DB2 347 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 FDXACB1Q9BRP7 624 aaPredicted RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 CCDC90BQ9GZT6 254 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 V9GYQ6 96 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 CLUHO75153 1309 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 C1orf232A0A0U1RR37 186 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 ITGAVP06756 1048 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 STAG3L1P0CL83 205 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 RAG1P15918 1043 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 KLRC2P26717 231 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 SLC1A6P48664 564 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 TUBP50607 506 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 ATXN1P54253 815 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 GALNTL6Q49A17 601 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 MARK2Q7KZI7 788 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 FBXO16Q8IX29 292 aaPredicted RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 SPATA6LQ8N4H0 392 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 TMEM176AQ96HP8 235 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 PRPF18Q99633 342 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 CNPY3Q9BT09 278 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 CYP4F12Q9HCS2 524 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 TRNAU1APQ9NX07 287 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 COQ4Q9Y3A0 265 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 HES2Q9Y543 173 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 BOLA2-SMG1P6H3BVE0 249 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 ERBB2P04626 1255 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 CYP1A1P04798 512 aaPredicted RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 ANPEPP15144 967 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 PTPRAP18433 802 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 FUT4P22083 530 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 CYP2F1P24903 491 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 SKIV2L2P42285 1042 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 HSD17B4P51659 736 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 MRPS22P82650 360 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 RAB6CQ53S08 254 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 NEK10Q6ZWH5 1172 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 BRSK2Q8IWQ3 736 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 GDPD5Q8WTR4 605 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 NDRG1Q92597 394 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 LGMNQ99538 433 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 RAB6CQ9H0N0 254 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 SOX13Q9UN79 622 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 SERPINI2O75830 405 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 ASS1P00966 412 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 RALBP11234 206 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 IL1RL1Q01638 556 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 FSCBQ5H9T9 825 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 B3GNT6Q6ZMB0 384 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 BBS12Q6ZW61 710 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 LPCAT2Q7L5N7 544 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 APOBEC3FQ8IUX4 373 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 PORCNQ9H237 461 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 HACD3Q9P035 362 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 AURKCQ9UQB9 309 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 DRG1Q9Y295 367 aaKnown RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 ZNF536O15090 1300 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 DOCK2Q92608 1830 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 LACTBL1A8MY62 500 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 PRPF4O43172 522 aaKnown RBP eCLIP12.25□□□□□ -0.45
HMGB1-206ENST00000405805 MOCS2O96007 188 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-206ENST00000405805 GBE1Q04446 702 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 CACNB2Q08289 660 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-206ENST00000405805 FOXD4Q12950 439 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-206ENST00000405805 FLOT2Q14254 428 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 USP10Q14694 798 aaKnown RBP12.25□□□□□ -0.45
HMGB1-206ENST00000405805 TMEM132BQ14DG7 1078 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 PDPK2PQ6A1A2 396 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 TMEM192Q8IY95 271 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 ZBTB8BQ8NAP8 495 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-206ENST00000405805 EME1Q96AY2 570 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 HMGXB4Q9UGU5 601 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 DTNAQ9Y4J8 743 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 E7ENQ6 273 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 TBC1D12O60347 775 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 GRIN3BO60391 1043 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 KCNA2P16389 499 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 SERPINB1P30740 379 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 GNL1P36915 607 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-206ENST00000405805 TGFB2P61812 414 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 ITGADQ13349 1161 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 FAM47CQ5HY64 1035 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 EFHC2Q5JST6 749 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 FKBP1CQ5VVH2 108 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 CDHR3Q6ZTQ4 885 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 HPS6Q86YV9 775 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 WDR49Q8IV35 697 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms