RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TRIM24O15164 1050 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 KRT38O76015 456 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 SEC24DO94855 1032 aaPredicted RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 ITGB1P05556 798 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 SNRNP70P08621 437 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 BMP5P22003 454 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 AKT1P31749 480 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 GRK5P34947 590 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 PGM1P36871 562 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 ANP32AP39687 249 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 RARSP54136 660 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 ALDH18A1P54886 795 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CSE1LP55060 971 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 RPP30P78346 268 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 ATP8B2P98198 1209 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 C17orf67Q0P5P2 114 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 LRRC74AQ0VAA2 488 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 BTBD16Q32M84 506 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 KRTAP15-1Q3LI76 137 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 TRIM60Q495X7 471 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 TIGD2Q4W5G0 525 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 FAM69AQ5T7M9 428 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 DEPDC1Q5TB30 811 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 NAIF1Q69YI7 327 aaPredicted RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 ANO7Q6IWH7 933 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 TAF2Q6P1X5 1199 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 MTFR2Q6P444 385 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 SHQ1Q6PI26 577 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CYP20A1Q6UW02 462 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 GADL1Q6ZQY3 521 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 LRRC8DQ7L1W4 858 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 MRGPREQ86SM8 312 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 GPR149Q86SP6 731 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 KRT73Q86Y46 540 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 ETNPPLQ8TBG4 499 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 KIF1BPQ96EK5 621 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CCDC43Q96MW1 224 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 MOGAT1Q96PD6 335 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CPPED1Q9BRF8 314 aaPredicted RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 FUZQ9BT04 418 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 C1orf43Q9BWL3 253 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 TRIM5Q9C035 493 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 SLC25A18Q9H1K4 315 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 A1CFQ9NQ94 594 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 INTS10Q9NVR2 710 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 TAS2R10Q9NYW0 307 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 NDUFAF4Q9P032 175 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 TRPS1Q9UHF7 1281 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 SH3BGRL2Q9UJC5 107 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 ZMYND8Q9ULU4 1186 aaPredicted RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CA14Q9ULX7 337 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 SORCS3Q9UPU3 1222 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 A0A0U1RQK1 487 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 ZNF320A2RRD8 509 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 NPIPB15A6NHN6 443 aaPredicted RBP4.4□□□□□ -1.71
HMGB1-204ENST00000399489 TMEM233B4DJY2 109 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 F2RL2O00254 374 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 TAF4O00268 1085 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 KLK10O43240 276 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 NRP2O60462 931 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 SYNCRIPO60506 623 aaKnown RBP4.4□□□□□ -1.71
HMGB1-204ENST00000399489 SOCS5O75159 536 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 STAM2O75886 525 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 PIAS2O75928 621 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 MATN4O95460 622 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 METTL18O95568 372 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 UBL4AP11441 157 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 RPS2P15880 293 aaKnown RBP4.4□□□□□ -1.71
HMGB1-204ENST00000399489 GAP43P17677 238 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 MST1P26927 711 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 EEF1DP29692 281 aaKnown RBP4.4□□□□□ -1.71
HMGB1-204ENST00000399489 GCH1P30793 250 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 GARSP41250 739 aaKnown RBP4.4□□□□□ -1.71
HMGB1-204ENST00000399489 PAFAH1B1P43034 410 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 HARS2P49590 506 aaKnown RBP4.4□□□□□ -1.71
HMGB1-204ENST00000399489 NSUN2Q08J23 767 aaKnown RBP eCLIP4.4□□□□□ -1.71
HMGB1-204ENST00000399489 COASYQ13057 564 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 ERMARDQ5T6L9 678 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 GARNL3Q5VVW2 1013 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 WDR73Q6P4I2 378 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 Q6ZVL8 140 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 GLRX5Q86SX6 157 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 FAM83AQ86UY5 434 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.4□□□□□ -1.71
HMGB1-204ENST00000399489 TBC1D21Q8IYX1 336 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 UNC5BQ8IZJ1 945 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 AOPEPQ8N6M6 819 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 GPR156Q8NFN8 814 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 IPMKQ8NFU5 416 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 OR5M3Q8NGP4 307 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 DENND1AQ8TEH3 1009 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 KRT35Q92764 455 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 C3orf49Q96BT1 292 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 ZNF653Q96CK0 615 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 PGAP3Q96FM1 320 aaPredicted RBP4.4□□□□□ -1.71
HMGB1-204ENST00000399489 FTOQ9C0B1 505 aaKnown RBP eCLIP4.4□□□□□ -1.71
HMGB1-204ENST00000399489 ANKRD2Q9GZV1 360 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 MANSC1Q9H8J5 431 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 IL21RQ9HBE5 538 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 TAB2Q9NYJ8 693 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms