RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 NUGGCQ68CJ6 796 aa20.58■□□□□ 0.88
CLN3-205ENST00000359984 UNC45BQ8IWX7 931 aa20.58■□□□□ 0.88
CLN3-205ENST00000359984 MMGT1Q8N4V1 131 aa20.58■□□□□ 0.88
CLN3-205ENST00000359984 EFHBQ8N7U6 833 aa20.58■□□□□ 0.88
CLN3-205ENST00000359984 C1orf54Q8WWF1 131 aa20.58■□□□□ 0.88
CLN3-205ENST00000359984 SLC46A2Q9BY10 475 aa20.58■□□□□ 0.88
CLN3-205ENST00000359984 SMPD4Q9NXE4 827 aa20.58■□□□□ 0.88
CLN3-205ENST00000359984 LMCD1Q9NZU5 365 aa20.58■□□□□ 0.88
CLN3-205ENST00000359984 EEF2KO00418 725 aaKnown RBP20.57■□□□□ 0.88
CLN3-205ENST00000359984 STC2O76061 302 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 LRIG2O94898 1065 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 AMPD1P23109 780 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 HCAR3P49019 387 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 MLLT6P55198 1093 aaPredicted RBP20.57■□□□□ 0.88
CLN3-205ENST00000359984 GRIN2CQ14957 1233 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 TEAD2Q15562 447 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 CYP1B1Q16678 543 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 PRSS36Q5K4E3 855 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 ARTNQ5T4W7 220 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 SLC9A4Q6AI14 798 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 TMEM184AQ6ZMB5 413 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 RFX8Q6ZV50 586 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 KLHL7Q8IXQ5 586 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.57■□□□□ 0.88
CLN3-205ENST00000359984 PLD4Q96BZ4 506 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 C1orf74Q96LT6 269 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 KRT12Q99456 494 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 EPAS1Q99814 870 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 DDX47Q9H0S4 455 aaKnown RBP20.57■□□□□ 0.88
CLN3-205ENST00000359984 PIDD1Q9HB75 910 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 ARHGEF4Q9NR80 690 aa20.57■□□□□ 0.88
CLN3-205ENST00000359984 TMEM265A0A087WTH1 108 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 TPI1P60174 286 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 DPYSQ14117 519 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 TEX35Q5T0J7 233 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 C14orf80Q86SX3 495 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 PLD5Q8N7P1 536 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 ATG4AQ8WYN0 398 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 WBP2Q969T9 261 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 MAGOHBQ96A72 148 aaKnown RBP20.56■□□□□ 0.88
CLN3-205ENST00000359984 HAUS1Q96CS2 278 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 FAM118BQ9BPY3 351 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 DCLK3Q9C098 648 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 ETNK2Q9NVF9 386 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 SAE1Q9UBE0 346 aaPredicted RBP20.56■□□□□ 0.88
CLN3-205ENST00000359984 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLN3-205ENST00000359984 CPQQ9Y646 472 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 V9GYY5 206 aaPredicted RBP20.56■□□□□ 0.88
CLN3-205ENST00000359984 TRAV19A0A0A6YYK7 116 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 APOL1O14791 398 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 PHF2O75151 1096 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 SRGAP2BP0DMP2 458 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 PFKLP17858 780 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 ZNF135P52742 658 aaPredicted RBP20.56■□□□□ 0.88
CLN3-205ENST00000359984 SLC7A9P82251 487 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 ZXDBP98169 803 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 NRG1Q02297 640 aaPredicted RBP20.56■□□□□ 0.88
CLN3-205ENST00000359984 MS4A13Q5J8X5 152 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 RARS2Q5T160 578 aaKnown RBP20.56■□□□□ 0.88
CLN3-205ENST00000359984 GPR158Q5T848 1215 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 C12orf50Q8NA57 414 aaPredicted RBP20.56■□□□□ 0.88
CLN3-205ENST00000359984 ADAMTS19Q8TE59 1207 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 TRIOBPQ9H2D6 2365 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 NOTCH4Q99466 2003 aa20.56■□□□□ 0.88
CLN3-205ENST00000359984 DENND4CQ5VZ89 1909 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 KLKB1P03952 638 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 CKMP06732 381 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 IRF1P10914 325 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 DDX6P26196 483 aaKnown RBP eCLIP20.55■□□□□ 0.88
CLN3-205ENST00000359984 HARS2P49590 506 aaKnown RBP20.55■□□□□ 0.88
CLN3-205ENST00000359984 MANEALQ5VSG8 457 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 TTC27Q6P3X3 843 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 NPNTQ6UXI9 565 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 TASP1Q9H6P5 420 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 LRRC19Q9H756 370 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 NEU3Q9UQ49 428 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 MFHAS1Q9Y4C4 1052 aa20.55■□□□□ 0.88
CLN3-205ENST00000359984 APOC4-APOC2K7ER74 178 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 ZNF197O14709 1029 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 DAPK3O43293 454 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 APOC2P02655 101 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 PECAM1P16284 738 aaPredicted RBP20.54■□□□□ 0.88
CLN3-205ENST00000359984 CORO1AP31146 461 aaKnown RBP20.54■□□□□ 0.88
CLN3-205ENST00000359984 MTA1Q13330 715 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 ADAM15Q13444 863 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 SNX1Q13596 522 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 AUHQ13825 339 aaKnown RBP20.54■□□□□ 0.88
CLN3-205ENST00000359984 CCNG2Q16589 344 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 ARHGAP15Q53QZ3 475 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 NADSYN1Q6IA69 706 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 ZNF683Q8IZ20 524 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 PRMT1Q99873 361 aaKnown RBP20.54■□□□□ 0.88
CLN3-205ENST00000359984 HOMER3Q9NSC5 361 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 MTCH2Q9Y6C9 303 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 GOLGA6L7A0A1B0GV03 622 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 E9PAM4 449 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 ACSL4O60488 711 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 ZFXP17010 805 aaPredicted RBP20.54■□□□□ 0.88
CLN3-205ENST00000359984 ERCC2P18074 760 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 EPHB2P29323 1055 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms