RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 TPCN2Q8NHX9 752 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 SLC7A6OSQ96CW6 309 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 CLPTM1LQ96KA5 538 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 HEXIM2Q96MH2 286 aaKnown RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 PWWP2AQ96N64 755 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 EBF3Q9H4W6 596 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 SELENONQ9NZV5 590 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 FAF1Q9UNN5 650 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 COG5Q9UP83 839 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 MICAL2O94851 1124 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 BRAFP15056 766 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 ABCB4P21439 1286 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 PCSK6P29122 969 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 NSFP46459 744 aaKnown RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 GSTM4Q03013 218 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 HP1BP3Q5SSJ5 553 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 MARK2Q7KZI7 788 aaKnown RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 MTDHQ86UE4 582 aaKnown RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 TMEM35BQ8NCS4 154 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 OR6B3Q8NGW1 331 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 SUSD3Q96L08 255 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 ZNF184Q99676 751 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 MIPEPQ99797 713 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 DPEP3Q9H4B8 488 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 ABHD14A-ACY1A0A1B0GW23 586 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 TCRBV5S1A1TA0A578 114 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 PFKMP08237 780 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 T-ENOLP0DO92 83 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 MYCLP1P12525 358 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-203ENST00000354674 GPD2P43304 727 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 LHX1P48742 406 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 WSCD1Q658N2 575 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 THOC7Q6I9Y2 204 aaKnown RBP10.43□□□□□ -0.74
SYNE1-203ENST00000354674 ACOT1Q86TX2 421 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 PASD1Q8IV76 773 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 AZIN2Q96A70 460 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 MIS12Q9H081 205 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 EPB41L4BQ9H329 900 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 SNX25Q9H3E2 840 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 UVRAGQ9P2Y5 699 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 CHORDC1Q9UHD1 332 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-203ENST00000354674 CYTH4Q9UIA0 394 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 COMMD3-BMI1R4GMX3 469 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 MKI67P46013 3256 aaKnown RBP10.43□□□□□ -0.74
SYNE1-203ENST00000354674 A8MXQ7 604 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 HCRTO43612 131 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 PIAS1O75925 651 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 B3GAT3O94766 335 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 CD19P15391 556 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 FOXN2P32314 431 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 GABRB2P47870 512 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 PPP1R26Q5T8A7 1209 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-203ENST00000354674 TMCO4Q5TGY1 634 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 MEI1Q5TIA1 1274 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.43□□□□□ -0.74
SYNE1-203ENST00000354674 C12orf29Q8N999 325 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 C1orf131Q8NDD1 294 aaKnown RBP10.43□□□□□ -0.74
SYNE1-203ENST00000354674 PIP4K2CQ8TBX8 421 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 RUBCNQ92622 972 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 PRR11Q96HE9 360 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-203ENST00000354674 OSGEPQ9NPF4 335 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 DSEQ9UL01 958 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 LRFN2Q9ULH4 789 aa10.43□□□□□ -0.74
SYNE1-203ENST00000354674 A6NL46 340 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 PGRMC1O00264 195 aaKnown RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 OXSR1O95747 527 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 ITGB1P05556 798 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 CDK4P11802 303 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 ODC1P11926 461 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 TYMPP19971 482 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 SSTR3P32745 418 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 RCVRNP35243 200 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 AUHQ13825 339 aaKnown RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 CYTH1Q15438 398 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 PLEKHA7Q6IQ23 1121 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 CENPTQ96BT3 561 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 TNIP3Q96KP6 325 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 CATSPER2Q96P56 530 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 MRPL9Q9BYD2 267 aaKnown RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 GRIP2Q9C0E4 1043 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 NRDE2Q9H7Z3 1164 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 RABL2AQ9UBK7 228 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 EFCAB14O75071 495 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 DGKIO75912 1065 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 RPL34P49207 117 aaKnown RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 TMED10P49755 219 aaKnown RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 GATMP50440 423 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 HDAC4P56524 1084 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 SLC34A1Q06495 639 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 KIAA0319Q5VV43 1072 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 C4orf50Q6ZRC1 276 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 PEX26Q7Z412 305 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 ST13P4Q8IZP2 240 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 TMEM199Q8N511 208 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 RTP3Q9BQQ7 232 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 TMEM175Q9BSA9 504 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 DNAI2Q9GZS0 605 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 FAM192AQ9GZU8 254 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 RC3H2Q9HBD1 1191 aaKnown RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 NPHS2Q9NP85 383 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms