RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 TBATAQ96M53 351 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 GFM1Q96RP9 751 aaKnown RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 FRMD8P1Q9BZ68 369 aaPredicted RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 KCNK4Q9NYG8 393 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 C3orf18Q9UK00 162 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 AXIN2Q9Y2T1 843 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 MRPL11Q9Y3B7 192 aaKnown RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 A0A0D9SFI3 127 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 RPS6KA4O75676 772 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 RP2O75695 350 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 ME2P23368 584 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 POU1F1P28069 291 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 EIF5AP63241 154 aaKnown RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 RPP38P78345 283 aaKnown RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.3□□□□□ -1.4
VCAN-203ENST00000343200 LLGL2Q6P1M3 1020 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 VANGL1Q8TAA9 524 aaPredicted RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 SLC4A9Q96Q91 983 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 BBS4Q96RK4 519 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 EXO5Q9H790 373 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 SPAG4Q9NPE6 437 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 RAD54BQ9Y620 910 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 C3orf70A6NLC5 250 aaPredicted RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 TRIM3O75382 744 aaPredicted RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 NPTXRO95502 500 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 HPCAL1P37235 193 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 CBX5P45973 191 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 SCNN1BP51168 640 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 PTPN5P54829 565 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 FOLH1Q04609 750 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 EAPPQ56P03 285 aaPredicted RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 SPOUT1Q5T280 376 aaKnown RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 INTS11Q5TA45 600 aaKnown RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 TEX19Q8NA77 164 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 PNMA1Q8ND90 353 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 TBC1D15Q8TC07 691 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 AGAP11Q8TF27 550 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 GTPBP2Q9BX10 602 aaKnown RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 TRIM2Q9C040 744 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 E7ENX8 843 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 REM1O75628 298 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 CDC25CP30307 473 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 GRK4P32298 578 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 AFF1P51825 1210 aaKnown RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 ZNF211Q13398 564 aaPredicted RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 FUT11Q495W5 492 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 SLC45A4Q5BKX6 768 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 ZCCHC8Q6NZY4 707 aaKnown RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 FRMD5Q7Z6J6 570 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 DAW1Q8N136 415 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 MIER2Q8N344 545 aa6.3□□□□□ -1.4
VCAN-203ENST00000343200 UNKQ9C0B0 810 aaKnown RBP6.3□□□□□ -1.4
VCAN-203ENST00000343200 PGRMC2O15173 223 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 NDUFS3O75489 264 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 UNC5CO95185 931 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ITGA8P53708 1063 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 EIF6P56537 245 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 GNG2P59768 71 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ILF2Q12905 390 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 SPDYCQ5MJ68 293 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 TTC23LQ6PF05 361 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 FAM228AQ86W67 206 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 SLC44A2Q8IWA5 706 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 C8orf58Q8NAV2 365 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ACMSDQ8TDX5 336 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 FIG4Q92562 907 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 DDX17Q92841 729 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 FAM193BQ96PV7 902 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 HERC2P3Q9BVR0 1158 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 POLR3BQ9NW08 1133 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 GRHL1Q9NZI5 618 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 DHRS7Q9Y394 339 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 FADS3Q9Y5Q0 445 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ZSCAN5CA6NGD5 496 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 B3GALNT1O75752 331 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PRKD3O94806 890 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 CD2BP2O95400 341 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 PRG2P13727 222 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PTSQ03393 145 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PABPC4Q13310 644 aaKnown RBP eCLIP6.29□□□□□ -1.4
VCAN-203ENST00000343200 FAM131AQ6UXB0 335 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 NOA1Q8NC60 698 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 GPATCH1Q9BRR8 931 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 NAT9Q9BTE0 207 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ZSCAN5AQ9BUG6 496 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PAK5Q9P286 719 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PCDHA1Q9Y5I3 950 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 KDM5BQ9UGL1 1544 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 NPATQ14207 1427 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 A0A087WWV3 80 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 KLRF2D3W0D1 207 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RIMBP2O15034 1052 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 CAMTA2O94983 1202 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ASMTLO95671 621 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PSMA1P25786 263 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 PSMC5P62195 406 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 MTA1Q13330 715 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 HKDC1Q2TB90 917 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 CDKL4Q5MAI5 379 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 BRMS1LQ5PSV4 323 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms