RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 FARP2O94887 1054 aaPredicted RBP23.03■■□□□ 1.28
TRIM28-202ENST00000341753 ATP6V1B1P15313 513 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 USP46P62068 366 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 PTPN11Q06124 597 aaPredicted RBP23.03■■□□□ 1.28
TRIM28-202ENST00000341753 PAOXQ6QHF9 649 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 PPP1R36Q96LQ0 422 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 SORCS3Q9UPU3 1222 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 BRCA1P38398 1863 aaKnown RBP23.03■■□□□ 1.28
TRIM28-202ENST00000341753 OGTO15294 1046 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 PLIN3O60664 434 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 TNNC2P02585 160 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 PMLP29590 882 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 DEUP1Q05D60 604 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 FAM183BPQ6ZVS7 135 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 MOB2Q70IA6 237 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 CNPY3Q9BT09 278 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 MRPL4Q9BYD3 311 aaKnown RBP23.03■■□□□ 1.28
TRIM28-202ENST00000341753 DDX18Q9NVP1 670 aaKnown RBP23.03■■□□□ 1.28
TRIM28-202ENST00000341753 UBAP1Q9NZ09 502 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 CPSF3Q9UKF6 684 aaKnown RBP23.03■■□□□ 1.28
TRIM28-202ENST00000341753 PCDHA11Q9Y5I1 949 aa23.03■■□□□ 1.28
TRIM28-202ENST00000341753 ADM5C9JUS6 153 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 ZBTB14O43829 449 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 ALDH1A3P47895 512 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 GBE1Q04446 702 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 ITGA9Q13797 1035 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 TMEM132AQ24JP5 1023 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 ZNF667Q5HYK9 610 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 FBXW8Q8N3Y1 598 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 PPP4R1Q8TF05 950 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 TRAPPC12Q8WVT3 735 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 PGBD4Q96DM1 585 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 HEXIM2Q96MH2 286 aaKnown RBP23.02■■□□□ 1.28
TRIM28-202ENST00000341753 ACO2Q99798 780 aaKnown RBP23.02■■□□□ 1.28
TRIM28-202ENST00000341753 TMEM134Q9H6X4 195 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 XPNPEP3Q9NQH7 507 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 ARIH2O95376 493 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 TCF7P36402 384 aaPredicted RBP23.02■■□□□ 1.28
TRIM28-202ENST00000341753 MOCOSQ96EN8 888 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 ATXN7L3BQ96GX2 97 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 PCDH18Q9HCL0 1135 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 APPL1Q9UKG1 709 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 PHF24Q9UPV7 400 aa23.02■■□□□ 1.28
TRIM28-202ENST00000341753 C2CD4BA6NLJ0 364 aa23.02■■□□□ 1.27
TRIM28-202ENST00000341753 B4GALT5O43286 388 aa23.02■■□□□ 1.27
TRIM28-202ENST00000341753 CXCL8P10145 99 aa23.02■■□□□ 1.27
TRIM28-202ENST00000341753 FDFT1P37268 417 aa23.02■■□□□ 1.27
TRIM28-202ENST00000341753 GPD2P43304 727 aa23.02■■□□□ 1.27
TRIM28-202ENST00000341753 RNF149Q8NC42 400 aa23.02■■□□□ 1.27
TRIM28-202ENST00000341753 JADE3Q92613 823 aa23.02■■□□□ 1.27
TRIM28-202ENST00000341753 DCUN1D1Q96GG9 259 aa23.02■■□□□ 1.27
TRIM28-202ENST00000341753 TMEM216Q9P0N5 145 aa23.02■■□□□ 1.27
TRIM28-202ENST00000341753 ASLP04424 464 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 SERPINE1P05121 402 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 STAT5BP51692 787 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 BTKQ06187 659 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 MAP7Q14244 749 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 CES3Q6UWW8 571 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 SDCCAG8Q86SQ7 713 aaPredicted RBP23.01■■□□□ 1.27
TRIM28-202ENST00000341753 TNS4Q8IZW8 715 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 ANKRD36BP1Q96IX9 119 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 CLMNQ96JQ2 1002 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 GRIP2Q9C0E4 1043 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 SIX4Q9UIU6 781 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 VILLO15195 856 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 PRKCGP05129 697 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 PRKCBP05771 671 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 ATP5BP06576 529 aaKnown RBP23.01■■□□□ 1.27
TRIM28-202ENST00000341753 SERPINB9P50453 376 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 SESN2P58004 480 aaPredicted RBP23.01■■□□□ 1.27
TRIM28-202ENST00000341753 OLFML2BQ68BL8 750 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 ZPBP2Q6X784 338 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 LBX2Q6XYB7 198 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 METTL25Q8N6Q8 603 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 RTP4Q96DX8 246 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 CMTM5Q96DZ9 223 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 CNBD2Q96M20 576 aa23.01■■□□□ 1.27
TRIM28-202ENST00000341753 COX4I1P13073 169 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 MAGEA3P43357 314 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 SLC10A2Q12908 348 aaPredicted RBP23■■□□□ 1.27
TRIM28-202ENST00000341753 MAP3K21Q5TCX8 1036 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 KBTBD6Q86V97 674 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 SNRNP25Q9BV90 132 aaKnown RBP23■■□□□ 1.27
TRIM28-202ENST00000341753 FRMD8Q9BZ67 464 aaPredicted RBP23■■□□□ 1.27
TRIM28-202ENST00000341753 MIS12Q9H081 205 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 NRDE2Q9H7Z3 1164 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 GALNT8Q9NY28 637 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 ZNF195O14628 629 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 AIM2O14862 343 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 TFAP2AP05549 437 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 NFICP08651 508 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 SERPINB5P36952 375 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 SNAPC2Q13487 334 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 HSDL1Q3SXM5 330 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 CCDC14Q49A88 953 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 EEF1DP3Q658K8 133 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 PACS1Q6VY07 963 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 MAP7D3Q8IWC1 876 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 APBB2Q92870 758 aa23■■□□□ 1.27
TRIM28-202ENST00000341753 OTUD5Q96G74 571 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms