RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 ZNF638Q14966 1978 aaKnown RBP12.34□□□□□ -0.43
SPTLC1-202ENST00000337841 DOCK8Q8NF50 2099 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 A0A0A6YYK5 440 aaPredicted RBP12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 F5H5T6 163 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 SPECC1L-ADORA2AF8WAN1 911 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 HOXC11O43248 304 aaPredicted RBP12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 PRPSAP2O60256 369 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 MTA2O94776 668 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 PROSCO94903 275 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 TACR2P21452 398 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 GJA4P35212 333 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 PCK1P35558 622 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 SSR1P43307 286 aaKnown RBP12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 VAV2P52735 878 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 NAP1L1P55209 391 aaKnown RBP12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 CCDC173Q0VFZ6 552 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 HADHQ16836 314 aaKnown RBP12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 BOLA3Q53S33 107 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 MS4A13Q5J8X5 152 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 RABGAP1LQ5R372 815 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 MPP7Q5T2T1 576 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 PIK3R6Q5UE93 754 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 RAP1GAP2Q684P5 730 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 NADSYN1Q6IA69 706 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 ZNF852Q6ZMS4 543 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 NUDT18Q6ZVK8 323 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 LGI2Q8N0V4 545 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 SIX5Q8N196 739 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 NIPA2Q8N8Q9 360 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 ACRBPQ8NEB7 543 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 FAM3CQ92520 227 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 NTAN1Q96AB6 310 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 ADAM33Q9BZ11 813 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 TRIM7Q9C029 511 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 OSBPL2Q9H1P3 480 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 ARHGEF3Q9NR81 526 aa12.33□□□□□ -0.44
SPTLC1-202ENST00000337841 OTOL1A6NHN0 477 aaPredicted RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 BTNL10A8MVZ5 291 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 NEDD8-MDP1E9PL57 170 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 TRDMT1O14717 391 aaKnown RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 PJA2O43164 708 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 TYRP14679 529 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 MIPP30301 263 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 CTHP32929 405 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 GALK1P51570 392 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 STARD6P59095 220 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 AUHQ13825 339 aaKnown RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 MESDQ14696 234 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 IFI16Q16666 785 aaKnown RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 RAB6CQ53S08 254 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 FAM133BQ5BKY9 247 aaKnown RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 EFHC2Q5JST6 749 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 ERMARDQ5T6L9 678 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 RFWD3Q6PCD5 774 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 TPRG1Q6ZUI0 275 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 NAT16Q8N8M0 369 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 ZNF557Q8N988 423 aaPredicted RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 HJURPQ8NCD3 748 aaPredicted RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 CD101Q93033 1021 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 BTBD6Q96KE9 485 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 PNKPQ96T60 521 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 PRMT1Q99873 361 aaKnown RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 P2RY13Q9BPV8 354 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 SLC2A11Q9BYW1 496 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 RAB6CQ9H0N0 254 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 MFSD1Q9H3U5 465 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 OSGEPQ9NPF4 335 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 DEC1Q9P2X7 70 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 PCSK1NQ9UHG2 260 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 XPO7Q9UIA9 1087 aaKnown RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 REXO2Q9Y3B8 237 aaKnown RBP12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 ADGRG1Q9Y653 693 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 HS3ST4Q9Y661 456 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 COL6A3P12111 3177 aa12.32□□□□□ -0.44
SPTLC1-202ENST00000337841 PRUNE2Q8WUY3 3088 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 ANAPC1Q9H1A4 1944 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 KRBA1A5PL33 1030 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 TMEM110-MUSTN1A8MSY1 372 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 NCAM2O15394 837 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 TBL1XO60907 577 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 SRGAP2O75044 1071 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 LRCH4O75427 683 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 PENKP01210 267 aaPredicted RBP12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 CCDC175P0C221 793 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 SLC6A4P31645 630 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 MAN1A1P33908 653 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 EIF2DP41214 584 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 SLC1A1P43005 524 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 SOX9P48436 509 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 VCPP55072 806 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 HADHBP55084 474 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 CCZ1BP86790 482 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 CCZ1P86791 482 aaPredicted RBP12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 ZNF252P-AS1Q0IIN9 211 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 SCAPQ12770 1279 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 GRSF1Q12849 480 aaKnown RBP eCLIP12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 TTC39BQ5VTQ0 682 aaPredicted RBP12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 FBXL22Q6P050 247 aa12.31□□□□□ -0.44
SPTLC1-202ENST00000337841 PSTKQ8IV42 348 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms