RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 BTN2A3PQ96KV6 586 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 OLFM3Q96PB7 478 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 MAGEB5Q9BZ81 275 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 ZNF334Q9HCZ1 680 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 TMPRSS4Q9NRS4 437 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 ARGLU1Q9NWB6 273 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 OR12D3Q9UGF7 316 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 MSRAQ9UJ68 235 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 UTP11Q9Y3A2 253 aaKnown RBP15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 ZNF638Q14966 1978 aaKnown RBP15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 CFAP69A5D8W1 941 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 WASH4PA8MWX3 477 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 H0YGN5 161 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 FGF10O15520 208 aaPredicted RBP15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 COCHO43405 550 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 LRIG2O94898 1065 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 CDC25CP30307 473 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 PBX2P40425 430 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 KCNJ1P48048 391 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 TPI1P60174 286 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 DYNLT1P63172 113 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 COG7P83436 770 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 SLC7A5Q01650 507 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 GUCY2DQ02846 1103 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 FBXO38Q6PIJ6 1188 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 BZW1Q7L1Q6 419 aaKnown RBP15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 UNC45BQ8IWX7 931 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 ZNF683Q8IZ20 524 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 ELMOD1Q8N336 334 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 ATP6V0D2Q8N8Y2 350 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 LEMD2Q8NC56 503 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 RETREG1Q9H6L5 497 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 FAM114A2Q9NRY5 505 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 ZDHHC7Q9NXF8 308 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 PPARGC1AQ9UBK2 798 aaKnown RBP15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 SLC12A6Q9UHW9 1150 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 NUDT5Q9UKK9 219 aa15.42■□□□□ 0.06
CCDC88C-202ENST00000334448 IGLV3-10A0A075B6K4 115 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 SLC12A8A0AV02 714 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 BCLAF3A2AJT9 711 aaKnown RBP15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 HACD1B0YJ81 288 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 LATS1O95835 1130 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 ERCC2P18074 760 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 CA8P35219 290 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 EIF3EP60228 445 aaKnown RBP15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 C5orf22Q49AR2 442 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 PPM1LQ5SGD2 360 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 PIK3R6Q5UE93 754 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 ELMSAN1Q6PJG2 1045 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 PDZD4Q76G19 769 aaPredicted RBP15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 CCDC89Q8N998 374 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 CASKIN2Q8WXE0 1202 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 TBC1D31Q96DN5 1066 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 PRMT1Q99873 361 aaKnown RBP15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 BRD8Q9H0E9 1235 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 PCDH9Q9HC56 1237 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 EPB41L5Q9HCM4 733 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 DTLQ9NZJ0 730 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 HS3ST4Q9Y661 456 aa15.41■□□□□ 0.06
CCDC88C-202ENST00000334448 CHD7Q9P2D1 2997 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 ZSCAN5CA6NGD5 496 aaPredicted RBP15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 NCAM2O15394 837 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 CREB3O43889 395 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 ERLIN1O75477 346 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 SPATA31D3P0C874 917 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 RBP3P10745 1247 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 AMPD1P23109 780 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 IVDP26440 423 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 ECHS1P30084 290 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 STIP1P31948 543 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 SERPINB6P35237 376 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 MRPS25P82663 173 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 GBE1Q04446 702 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 SNX1Q13596 522 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 MAP9Q49MG5 647 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 PPP2R2DQ66LE6 453 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 SPATA31D4Q6ZUB0 917 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 GAREM2Q75VX8 874 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 MIB1Q86YT6 1006 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 CDKL3Q8IVW4 592 aaPredicted RBP15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 MICAL1Q8TDZ2 1067 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 AENQ8WTP8 325 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 HAUS1Q96CS2 278 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 QKIQ96PU8 341 aaKnown RBP eCLIP15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 CDCA3Q99618 268 aaPredicted RBP15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 TRIM51Q9BSJ1 452 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 KLF16Q9BXK1 252 aaPredicted RBP15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 NKX2-4Q9H2Z4 354 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 PRO3102Q9H379 93 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 MAN1C1Q9NR34 630 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 ASAH2Q9NR71 780 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 ETNK2Q9NVF9 386 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 DONSONQ9NYP3 566 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 WHRNQ9P202 907 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 SAE1Q9UBE0 346 aaPredicted RBP15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 STOML2Q9UJZ1 356 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 ZNF148Q9UQR1 794 aa15.4■□□□□ 0.06
CCDC88C-202ENST00000334448 NDC80O14777 642 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 MFSD11O43934 449 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 DDX6P26196 483 aaKnown RBP eCLIP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms