RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PNKPQ96T60 521 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 WDCPQ9H6R7 721 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 NHEJ1Q9H9Q4 299 aaPredicted RBP16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 ARHGEF4Q9NR80 690 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 PAXBP1Q9Y5B6 917 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 KIAA1549LQ6ZVL6 1849 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 CACNG3O60359 315 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 DRD1P21728 446 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 EIF2DP41214 584 aaKnown RBP16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 SGSHP51688 502 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 FZD5Q13467 585 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 CCINQ13939 588 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 SLC18A3Q16572 532 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 RAB6CQ53S08 254 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 DGKKQ5KSL6 1271 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 BRMS1LQ5PSV4 323 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 SH3PXD2AQ5TCZ1 1133 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 RAP1GAP2Q684P5 730 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 FAM131BQ86XD5 332 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 CLDN23Q96B33 292 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 TMA16Q96EY4 203 aaKnown RBP16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 CCDC42Q96M95 316 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 TKTL2Q9H0I9 626 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 RAB6CQ9H0N0 254 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 DLGAP2Q9P1A6 1054 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 DEC1Q9P2X7 70 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 SCINQ9Y6U3 715 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 F5P12259 2224 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 GFRA2O00451 464 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 TRIM24O15164 1050 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 CCP110O43303 1012 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 APODP05090 189 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 TACR2P21452 398 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 CDC25BP30305 580 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 ZNF143P52747 638 aaPredicted RBP16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 MESP2Q0VG99 397 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 ASTE1Q2TB18 679 aaPredicted RBP16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 MS4A13Q5J8X5 152 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 PIK3R6Q5UE93 754 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 GRAMD4Q6IC98 578 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 BNIPLQ7Z465 357 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 LGI2Q8N0V4 545 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 SPC24Q8NBT2 197 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 HJURPQ8NCD3 748 aaPredicted RBP16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 FAM172AQ8WUF8 416 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 PRICKLE1Q96MT3 831 aaPredicted RBP16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 THAP2Q9H0W7 228 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 ARHGEF38Q9NXL2 777 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 NENFQ9UMX5 172 aa16.47■□□□□ 0.23
CCDC28A-201ENST00000332797 ZDBF2Q9HCK1 2354 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 TYW5A2RUC4 315 aaKnown RBP16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 TBL1XO60907 577 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 PAGE1O75459 146 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 ENDOD1O94919 500 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 KAT7O95251 611 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 HOXD9P28356 352 aaPredicted RBP16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 GRIA2P42262 883 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 MAGEA9P43362 315 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 RPS9P46781 194 aaKnown RBP16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 DGKGP49619 791 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 OGDHQ02218 1023 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 MTA1Q13330 715 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 Q6ZS52 159 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 STRADAQ7RTN6 431 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 SFTPA1Q8IWL2 248 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 PHTF2Q8N3S3 785 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 EZH1Q92800 747 aaPredicted RBP16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 MYEOVQ96EZ4 313 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 SIK2Q9H0K1 926 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 MRPL47Q9HD33 250 aaKnown RBP16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 ANLNQ9NQW6 1124 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 TMPRSS4Q9NRS4 437 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 SPTLC3Q9NUV7 552 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 TMEM51Q9NW97 253 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 STIM2Q9P246 746 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 HS3ST4Q9Y661 456 aa16.46■□□□□ 0.23
CCDC28A-201ENST00000332797 F5H5T6 163 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 RNF40O75150 1001 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 DESP17661 470 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 PSMA2P25787 234 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 GGCXP38435 758 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 GALCP54803 685 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 SEC13P55735 322 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 RPS24P62847 133 aaKnown RBP16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 PREPLQ4J6C6 727 aaPredicted RBP16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 CFAP52Q8N1V2 620 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 SYNPOQ8N3V7 929 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 DTWD2Q8NBA8 298 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 CENPIQ92674 756 aaPredicted RBP16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 PRMT1Q99873 361 aaKnown RBP16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 CNPY3Q9BT09 278 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 IRX2Q9BZI1 471 aaPredicted RBP16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 CHRDQ9H2X0 955 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 CLEC4EQ9ULY5 219 aa16.45■□□□□ 0.22
CCDC28A-201ENST00000332797 TBC1D3BA6NDS4 549 aa16.44■□□□□ 0.22
CCDC28A-201ENST00000332797 TMEM191CA6NGB0 347 aa16.44■□□□□ 0.22
CCDC28A-201ENST00000332797 I6L893 689 aaPredicted RBP16.44■□□□□ 0.22
CCDC28A-201ENST00000332797 HDAC4P56524 1084 aa16.44■□□□□ 0.22
CCDC28A-201ENST00000332797 FBXO43Q4G163 708 aa16.44■□□□□ 0.22
CCDC28A-201ENST00000332797 C10orf76Q5T2E6 689 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms