RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 KIZQ2M2Z5 673 aa13.02□□□□□ -0.32
LIG1-201ENST00000263274 TRMT5Q32P41 509 aaKnown RBP13.02□□□□□ -0.32
LIG1-201ENST00000263274 TBC1D25Q3MII6 688 aa13.02□□□□□ -0.32
LIG1-201ENST00000263274 DCAF6Q58WW2 860 aa13.02□□□□□ -0.32
LIG1-201ENST00000263274 RAPH1Q70E73 1250 aa13.02□□□□□ -0.32
LIG1-201ENST00000263274 TTC30AQ86WT1 665 aa13.02□□□□□ -0.32
LIG1-201ENST00000263274 SIGLEC10Q96LC7 697 aa13.02□□□□□ -0.32
LIG1-201ENST00000263274 KLHL8Q9P2G9 620 aaPredicted RBP13.02□□□□□ -0.32
LIG1-201ENST00000263274 ABLIM1O14639 778 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 HBP1O60381 514 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 ETS2P15036 469 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 TGM2P21980 687 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 COPAP53621 1224 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 OCRLQ01968 901 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 IFRD2Q12894 506 aaPredicted RBP13.02□□□□□ -0.33
LIG1-201ENST00000263274 GRM1Q13255 1194 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 HSF5Q4G112 596 aaPredicted RBP13.02□□□□□ -0.33
LIG1-201ENST00000263274 CELF3Q5SZQ8 465 aaKnown RBP13.02□□□□□ -0.33
LIG1-201ENST00000263274 CCDC185Q8N715 623 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 DRAXINQ8NBI3 349 aaPredicted RBP13.02□□□□□ -0.33
LIG1-201ENST00000263274 PHC3Q8NDX5 983 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 C7orf26Q96N11 449 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 FERMT1Q9BQL6 677 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 CXCL16Q9H2A7 254 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 DPEP3Q9H4B8 488 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 XPNPEP3Q9NQH7 507 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 SNTG2Q9NY99 539 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 UBP1Q9NZI7 540 aa13.02□□□□□ -0.33
LIG1-201ENST00000263274 TNS1Q9HBL0 1735 aaKnown RBP13.01□□□□□ -0.33
LIG1-201ENST00000263274 IGKV6D-21A0A0A0MT36 114 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 SERPINB5P36952 375 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 HDAC4P56524 1084 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 TNFAIP2Q03169 654 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 VGLL4Q14135 290 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 LBX2Q6XYB7 198 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 ADAM32Q8TC27 787 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 TFB1MQ8WVM0 346 aaKnown RBP13.01□□□□□ -0.33
LIG1-201ENST00000263274 HTR3CQ8WXA8 447 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 ZNF669Q96BR6 464 aaPredicted RBP13.01□□□□□ -0.33
LIG1-201ENST00000263274 SCYL1Q96KG9 808 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 RPL26L1Q9UNX3 145 aaKnown RBP13.01□□□□□ -0.33
LIG1-201ENST00000263274 EVPLQ92817 2033 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 SDR42E2A6NKP2 422 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 TGFB3P10600 412 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 RALBP11234 206 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 TSHRP16473 764 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 PSMB4P28070 264 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 SERPINB9P50453 376 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 RABGGTBP53611 331 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 MOB2Q70IA6 237 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 ARHGAP22Q7Z5H3 698 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 CAB39LQ9H9S4 337 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 CYP3A43Q9HB55 503 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 ARHGEF4Q9NR80 690 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 TMEM216Q9P0N5 145 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 ADAMTS5Q9UNA0 930 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 NFKBIEO00221 500 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 EFHC1Q5JVL4 640 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 PDPK2PQ6A1A2 396 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 SH2D5Q6ZV89 423 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 HPS6Q86YV9 775 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 C18orf25Q96B23 403 aaPredicted RBP13.01□□□□□ -0.33
LIG1-201ENST00000263274 CHCHD3Q9NX63 227 aaKnown RBP13.01□□□□□ -0.33
LIG1-201ENST00000263274 PCDHA11Q9Y5I1 949 aa13.01□□□□□ -0.33
LIG1-201ENST00000263274 SERPINA6P08185 405 aa13□□□□□ -0.33
LIG1-201ENST00000263274 TPH1P17752 444 aa13□□□□□ -0.33
LIG1-201ENST00000263274 TCN1P20061 433 aaPredicted RBP13□□□□□ -0.33
LIG1-201ENST00000263274 AKAP5P24588 427 aa13□□□□□ -0.33
LIG1-201ENST00000263274 CRHR1P34998 444 aa13□□□□□ -0.33
LIG1-201ENST00000263274 GLRBP48167 497 aa13□□□□□ -0.33
LIG1-201ENST00000263274 SULT1E1P49888 294 aa13□□□□□ -0.33
LIG1-201ENST00000263274 ZNF280AP59817 542 aaPredicted RBP13□□□□□ -0.33
LIG1-201ENST00000263274 PDE1CQ14123 709 aaPredicted RBP13□□□□□ -0.33
LIG1-201ENST00000263274 SPDYAQ5MJ70 313 aa13□□□□□ -0.33
LIG1-201ENST00000263274 C1QTNF12Q5T7M4 302 aa13□□□□□ -0.33
LIG1-201ENST00000263274 LCLAT1Q6UWP7 414 aa13□□□□□ -0.33
LIG1-201ENST00000263274 TUBGCP5Q96RT8 1024 aa13□□□□□ -0.33
LIG1-201ENST00000263274 ECSITQ9BQ95 431 aa13□□□□□ -0.33
LIG1-201ENST00000263274 SIRPGQ9P1W8 387 aa13□□□□□ -0.33
LIG1-201ENST00000263274 RNF103O00237 685 aa13□□□□□ -0.33
LIG1-201ENST00000263274 PRKCHP24723 683 aa13□□□□□ -0.33
LIG1-201ENST00000263274 DLG2Q15700 870 aa13□□□□□ -0.33
LIG1-201ENST00000263274 TAZQ16635 292 aa13□□□□□ -0.33
LIG1-201ENST00000263274 SLC5A9Q2M3M2 681 aa13□□□□□ -0.33
LIG1-201ENST00000263274 Q3C1V9 767 aa13□□□□□ -0.33
LIG1-201ENST00000263274 PACS1Q6VY07 963 aa13□□□□□ -0.33
LIG1-201ENST00000263274 CATSPER4Q7RTX7 472 aa13□□□□□ -0.33
LIG1-201ENST00000263274 NET1Q7Z628 596 aaPredicted RBP13□□□□□ -0.33
LIG1-201ENST00000263274 TP53INP2Q8IXH6 220 aa13□□□□□ -0.33
LIG1-201ENST00000263274 KLHL23Q8NBE8 558 aa13□□□□□ -0.33
LIG1-201ENST00000263274 TBCBQ99426 244 aa13□□□□□ -0.33
LIG1-201ENST00000263274 MMADHCQ9H3L0 296 aaPredicted RBP13□□□□□ -0.33
LIG1-201ENST00000263274 EBF3Q9H4W6 596 aa13□□□□□ -0.33
LIG1-201ENST00000263274 PDZD7Q9H5P4 517 aa13□□□□□ -0.33
LIG1-201ENST00000263274 GBA2Q9HCG7 927 aaPredicted RBP13□□□□□ -0.33
LIG1-201ENST00000263274 PTPRHQ9HD43 1115 aa13□□□□□ -0.33
LIG1-201ENST00000263274 SYBUQ9NX95 663 aa13□□□□□ -0.33
LIG1-201ENST00000263274 ERAP1Q9NZ08 941 aa13□□□□□ -0.33
LIG1-201ENST00000263274 BCLAF3A2AJT9 711 aaKnown RBP13□□□□□ -0.33
LIG1-201ENST00000263274 HMX2A2RU54 273 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms