RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MMP8P22894 467 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 CRABP2P29373 138 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 ART3Q13508 389 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 FAM131BQ86XD5 332 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 WFIKKN2Q8TEU8 576 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 GAS2L1Q99501 681 aaPredicted RBP14.03□□□□□ -0.16
LDLR-201ENST00000252444 DZANK1Q9NVP4 752 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 TBK1Q9UHD2 729 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 SMTNL2Q2TAL5 461 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 USP45Q70EL2 814 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 LRRC6Q86X45 466 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 DDX23Q9BUQ8 820 aaKnown RBP14.03□□□□□ -0.16
LDLR-201ENST00000252444 TXNRD2Q9NNW7 524 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 MAPRE3Q9UPY8 281 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 CYP1A1P04798 512 aaPredicted RBP14.03□□□□□ -0.16
LDLR-201ENST00000252444 GGCXP38435 758 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 MAGEA11P43364 429 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 MAGOHP61326 146 aaKnown RBP14.03□□□□□ -0.16
LDLR-201ENST00000252444 KBTBD12Q3ZCT8 623 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 TRMT11Q7Z4G4 463 aaKnown RBP14.03□□□□□ -0.16
LDLR-201ENST00000252444 LGI2Q8N0V4 545 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 CHMP6Q96FZ7 201 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 TRIM51Q9BSJ1 452 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 RABEP2Q9H5N1 569 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 AFF4Q9UHB7 1163 aaKnown RBP14.03□□□□□ -0.16
LDLR-201ENST00000252444 STXBP5LQ9Y2K9 1186 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 ARL5CA6NH57 179 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 OR1E1P30953 314 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 SLCO1A2P46721 670 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 KCNA1Q09470 495 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 RBBP5Q15291 538 aaKnown RBP14.03□□□□□ -0.16
LDLR-201ENST00000252444 LNX1Q8TBB1 728 aaPredicted RBP14.03□□□□□ -0.16
LDLR-201ENST00000252444 TTC17Q96AE7 1141 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 PANX3Q96QZ0 392 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 VPS45Q9NRW7 570 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 A0A0A0MRY4 1105 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 NFATC1O95644 943 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 CYBAP13498 195 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 KCTD16Q68DU8 428 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 SLC4A11Q8NBS3 891 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 ZNF669Q96BR6 464 aaPredicted RBP14.02□□□□□ -0.16
LDLR-201ENST00000252444 SPATA13Q96N96 652 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 CPNE1Q99829 537 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 TBL1YQ9BQ87 522 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 TKTL2Q9H0I9 626 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 KIAA1522Q9P206 1035 aaPredicted RBP14.02□□□□□ -0.16
LDLR-201ENST00000252444 SLC26A11Q86WA9 606 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 NIPA2Q8N8Q9 360 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 SPDYE1Q8NFV5 336 aaPredicted RBP14.02□□□□□ -0.16
LDLR-201ENST00000252444 IL22Q9GZX6 179 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 YY1AP1Q9H869 796 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 TBC1D30Q9Y2I9 924 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 A0A1B0GUL6 1792 aa14.02□□□□□ -0.16
LDLR-201ENST00000252444 A0A1W2PQ45 241 aaPredicted RBP14.02□□□□□ -0.17
LDLR-201ENST00000252444 A0A1W2PQY0 241 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 CXCL14O95715 111 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 ACAT1P24752 427 aaKnown RBP14.02□□□□□ -0.17
LDLR-201ENST00000252444 MMP13P45452 471 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 C3orf62Q6ZUJ4 267 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 CMTR2Q8IYT2 770 aaKnown RBP14.02□□□□□ -0.17
LDLR-201ENST00000252444 CRYGNQ8WXF5 182 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 SH3KBP1Q96B97 665 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 HES6Q96HZ4 224 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 PACSIN1Q9BY11 444 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 ANGPTL2Q9UKU9 493 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 USP20Q9Y2K6 914 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 IRAK2O43187 625 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 ZNF623O75123 536 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 GLP2RO95838 553 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 ACADMP11310 421 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 PTPN3P26045 913 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 LRPAP1P30533 357 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 VSNL1P62760 191 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 SERINC5Q86VE9 423 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 CRYBG2Q8N1P7 616 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 C1orf127Q8N9H9 656 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 COLGALT1Q8NBJ5 622 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 MCUQ8NE86 351 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 MS4A14Q96JA4 679 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 LRRC37BQ96QE4 947 aa14.02□□□□□ -0.17
LDLR-201ENST00000252444 SLX4Q8IY92 1834 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 MYH6P13533 1939 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 ZNF487B1APH4 448 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 GSTA4O15217 222 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 CNMDO75829 334 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 TCEAL1Q15170 157 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 OOSP2Q86WS3 158 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 TNIP2Q8NFZ5 429 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 ACTL9Q8TC94 416 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 UNC93B1Q9H1C4 597 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 ORC6Q9Y5N6 252 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.01□□□□□ -0.17
LDLR-201ENST00000252444 IGKV6-21A0A0C4DH24 114 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 TMEM191CA6NGB0 347 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 WNT7AO00755 349 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 HK2P52789 917 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 ARMC6Q6NXE6 501 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 HASPINQ8TF76 798 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 RNF157Q96PX1 679 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 TRIM10Q9UDY6 481 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms