RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 NRDE2Q9H7Z3 1164 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 NRBP2Q9NSY0 501 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 MTMR10Q9NXD2 777 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 E9PBE3 544 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 KLHL41O60662 606 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 PABPC4LP0CB38 370 aaKnown RBP12.77□□□□□ -0.37
NUP88-201ENST00000225696 TGM2P21980 687 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 CYP2F1P24903 491 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 ABCG1P45844 678 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 INHBCP55103 352 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 SESN2P58004 480 aaPredicted RBP12.77□□□□□ -0.37
NUP88-201ENST00000225696 FOLH1Q04609 750 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 ITGA9Q13797 1035 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 TTLL12Q14166 644 aaPredicted RBP12.77□□□□□ -0.37
NUP88-201ENST00000225696 STILQ15468 1287 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 TMEM132AQ24JP5 1023 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 PAOXQ6QHF9 649 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 PACS1Q6VY07 963 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 ARHGAP22Q7Z5H3 698 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 CMC1Q7Z7K0 106 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 ST13P4Q8IZP2 240 aaPredicted RBP12.77□□□□□ -0.37
NUP88-201ENST00000225696 CLEC4CQ8WTT0 213 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 ATXN7L3BQ96GX2 97 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 CLMNQ96JQ2 1002 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 CENPKQ9BS16 269 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 PDGFDQ9GZP0 370 aaPredicted RBP12.77□□□□□ -0.37
NUP88-201ENST00000225696 UBAP1Q9NZ09 502 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 ITGA11Q9UKX5 1188 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 INPP5FQ9Y2H2 1132 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 PTPRFP10586 1907 aa12.77□□□□□ -0.37
NUP88-201ENST00000225696 SMIM18P0DKX4 95 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 VAV1P15498 845 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 PTPRAP18433 802 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 ICAM3P32942 547 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 PGGT1BP53609 377 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 NIPAL4Q0D2K0 466 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 TBL3Q12788 808 aaKnown RBP12.76□□□□□ -0.37
NUP88-201ENST00000225696 GRAMD1BQ3KR37 738 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 TBC1D25Q3MII6 688 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 HSDL1Q3SXM5 330 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 SLC9B1Q4ZJI4 515 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 OLFML1Q6UWY5 402 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 SAMD7Q7Z3H4 446 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 TMC7Q7Z402 723 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 KBTBD6Q86V97 674 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 MAP7D3Q8IWC1 876 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 PLD6Q8N2A8 252 aaKnown RBP12.76□□□□□ -0.37
NUP88-201ENST00000225696 PYROXD2Q8N2H3 581 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 ZNF280CQ8ND82 737 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 AGBL3Q8NEM8 1001 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 ARNTL2Q8WYA1 636 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 LRRC39Q96DD0 335 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 DNAJC1Q96KC8 554 aaKnown RBP12.76□□□□□ -0.37
NUP88-201ENST00000225696 PPP1R36Q96LQ0 422 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 LGMNQ99538 433 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 FRMD8Q9BZ67 464 aaPredicted RBP12.76□□□□□ -0.37
NUP88-201ENST00000225696 CXCL16Q9H2A7 254 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 GBA2Q9HCG7 927 aaPredicted RBP12.76□□□□□ -0.37
NUP88-201ENST00000225696 SORCS3Q9UPU3 1222 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 GCATO75600 419 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 KLHL2O95198 593 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 SERPINE1P05121 402 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 ITGA2BP08514 1039 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 ERVK-10P10266 1014 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 PIM1P11309 404 aaPredicted RBP12.76□□□□□ -0.37
NUP88-201ENST00000225696 MGAT1P26572 445 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 CLCN3P51790 818 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 PDK2Q15119 407 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 PPM1LQ5SGD2 360 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 HACE1Q8IYU2 909 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 FBXW8Q8N3Y1 598 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 ZNF781Q8N8C0 355 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 MIS12Q9H081 205 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 COG4Q9H9E3 785 aa12.76□□□□□ -0.37
NUP88-201ENST00000225696 RPF1Q9H9Y2 349 aaKnown RBP12.76□□□□□ -0.37
NUP88-201ENST00000225696 C15orf38-AP3S2A0A0A6YYH1 394 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 SPDYE16A6NNV3 312 aaPredicted RBP12.75□□□□□ -0.37
NUP88-201ENST00000225696 ACKR2O00590 384 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 HCRTO43612 131 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 ALDH1A2O94788 518 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 ARIH2O95376 493 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 MLH1P40692 756 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 SERPINB9P50453 376 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 DYNC1I2Q13409 638 aaKnown RBP12.75□□□□□ -0.37
NUP88-201ENST00000225696 SURF1Q15526 300 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 BOLA3Q53S33 107 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 PPP1R26Q5T8A7 1209 aaPredicted RBP12.75□□□□□ -0.37
NUP88-201ENST00000225696 IER5Q5VY09 327 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 ARPINQ7Z6K5 226 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 SPATA24Q86W54 205 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 TTC30AQ86WT1 665 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 ZBTB8OSQ8IWT0 167 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 ARHGAP18Q8N392 663 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 METTL25Q8N6Q8 603 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 DRAXINQ8NBI3 349 aaPredicted RBP12.75□□□□□ -0.37
NUP88-201ENST00000225696 ADAM32Q8TC27 787 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 APBB2Q92870 758 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 OR52B2Q96RD2 323 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 FZD8Q9H461 694 aa12.75□□□□□ -0.37
NUP88-201ENST00000225696 DHX35Q9H5Z1 703 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms