RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 USP39Q53GS9 565 aaKnown RBP20.04■□□□□ 0.8
CLN3-260ENST00000637578 NUGGCQ68CJ6 796 aa20.04■□□□□ 0.8
CLN3-260ENST00000637578 RNF43Q68DV7 783 aa20.04■□□□□ 0.8
CLN3-260ENST00000637578 SLC47A2Q86VL8 602 aa20.04■□□□□ 0.8
CLN3-260ENST00000637578 GAS2L3Q86XJ1 694 aa20.04■□□□□ 0.8
CLN3-260ENST00000637578 UNC45BQ8IWX7 931 aa20.04■□□□□ 0.8
CLN3-260ENST00000637578 DQX1Q8TE96 717 aaKnown RBP20.04■□□□□ 0.8
CLN3-260ENST00000637578 SLC39A13Q96H72 371 aa20.04■□□□□ 0.8
CLN3-260ENST00000637578 ACOX2Q99424 681 aa20.04■□□□□ 0.8
CLN3-260ENST00000637578 TRIM62Q9BVG3 475 aa20.04■□□□□ 0.8
CLN3-260ENST00000637578 PNMA6AP0CW24 399 aaPredicted RBP20.03■□□□□ 0.8
CLN3-260ENST00000637578 HOXD9P28356 352 aaPredicted RBP20.03■□□□□ 0.8
CLN3-260ENST00000637578 TBX4P57082 545 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 BPIFB4P59827 614 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 YWHAZP63104 245 aaKnown RBP20.03■□□□□ 0.8
CLN3-260ENST00000637578 DRAP1Q14919 205 aaPredicted RBP20.03■□□□□ 0.8
CLN3-260ENST00000637578 FKBP15Q5T1M5 1219 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 SYPL2Q5VXT5 272 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 DDI1Q8WTU0 396 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 FCRL2Q96LA5 508 aaPredicted RBP20.03■□□□□ 0.8
CLN3-260ENST00000637578 CPXM1Q96SM3 734 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 TPSD1Q9BZJ3 242 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 POPDC2Q9HBU9 364 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 PLCB1Q9NQ66 1216 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 TJP2Q9UDY2 1190 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 TLR6Q9Y2C9 796 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 FHOD1Q9Y613 1164 aa20.03■□□□□ 0.8
CLN3-260ENST00000637578 DCLK1O15075 740 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 EPN2O95208 641 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 UCHL3P15374 230 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 ID4P47928 161 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 EIF4EBP2Q13542 120 aaPredicted RBP20.02■□□□□ 0.8
CLN3-260ENST00000637578 ENPP2Q13822 863 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 CSRP2Q16527 193 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 GEN1Q17RS7 908 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 FAM133BQ5BKY9 247 aaKnown RBP20.02■□□□□ 0.8
CLN3-260ENST00000637578 MPP7Q5T2T1 576 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 FAM149B1Q96BN6 582 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 RMDN1Q96DB5 314 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 TMA16Q96EY4 203 aaKnown RBP20.02■□□□□ 0.8
CLN3-260ENST00000637578 PPP1R13BQ96KQ4 1090 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 SERPINB11Q96P15 392 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 ANP32EQ9BTT0 268 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 SEMA4GQ9NTN9 838 aa20.02■□□□□ 0.8
CLN3-260ENST00000637578 SPAG17Q6Q759 2223 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 NPC1O15118 1278 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 SERPINC1P01008 464 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 IGLV3-25P01717 112 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 GLI1P08151 1106 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 HOXB2P14652 356 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 SLC11A2P49281 568 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 FANCCQ00597 558 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 UBXN1Q04323 297 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 C11orf74Q86VG3 221 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 CHPFQ8IZ52 775 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 NAP1L5Q96NT1 182 aaPredicted RBP20.01■□□□□ 0.79
CLN3-260ENST00000637578 STK33Q9BYT3 514 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 ASNSD1Q9NWL6 643 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 DLL3Q9NYJ7 618 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 PCDHGA5Q9Y5G8 931 aa20.01■□□□□ 0.79
CLN3-260ENST00000637578 A0A1B0GTH6 734 aa20■□□□□ 0.79
CLN3-260ENST00000637578 TCRBV21S2A2A0A5A6 115 aa20■□□□□ 0.79
CLN3-260ENST00000637578 IRAK2O43187 625 aa20■□□□□ 0.79
CLN3-260ENST00000637578 ACSL4O60488 711 aa20■□□□□ 0.79
CLN3-260ENST00000637578 SLC6A4P31645 630 aa20■□□□□ 0.79
CLN3-260ENST00000637578 KRT9P35527 623 aa20■□□□□ 0.79
CLN3-260ENST00000637578 P2RY2P41231 377 aa20■□□□□ 0.79
CLN3-260ENST00000637578 LMNB2Q03252 620 aa20■□□□□ 0.79
CLN3-260ENST00000637578 TAF5Q15542 800 aa20■□□□□ 0.79
CLN3-260ENST00000637578 PIK3R6Q5UE93 754 aa20■□□□□ 0.79
CLN3-260ENST00000637578 SDE2Q6IQ49 451 aa20■□□□□ 0.79
CLN3-260ENST00000637578 ANKS1BQ7Z6G8 1248 aa20■□□□□ 0.79
CLN3-260ENST00000637578 KIAA0907Q7Z7F0 614 aaPredicted RBP20■□□□□ 0.79
CLN3-260ENST00000637578 PASD1Q8IV76 773 aa20■□□□□ 0.79
CLN3-260ENST00000637578 HMGB4Q8WW32 186 aa20■□□□□ 0.79
CLN3-260ENST00000637578 LSM14BQ9BX40 385 aaKnown RBP20■□□□□ 0.79
CLN3-260ENST00000637578 RBSNQ9H1K0 784 aa20■□□□□ 0.79
CLN3-260ENST00000637578 RTN4Q9NQC3 1192 aaKnown RBP20■□□□□ 0.79
CLN3-260ENST00000637578 THAP10Q9P2Z0 257 aaPredicted RBP20■□□□□ 0.79
CLN3-260ENST00000637578 USP18Q9UMW8 372 aa20■□□□□ 0.79
CLN3-260ENST00000637578 SDK1Q7Z5N4 2213 aa20■□□□□ 0.79
CLN3-260ENST00000637578 CEP250Q9BV73 2442 aa20■□□□□ 0.79
CLN3-260ENST00000637578 PRR5-ARHGAP8B1AHC4 643 aa20■□□□□ 0.79
CLN3-260ENST00000637578 TEX33O43247 280 aa20■□□□□ 0.79
CLN3-260ENST00000637578 TIMM44O43615 452 aa20■□□□□ 0.79
CLN3-260ENST00000637578 TSPAN3O60637 253 aa20■□□□□ 0.79
CLN3-260ENST00000637578 RHOBTB1O94844 696 aa20■□□□□ 0.79
CLN3-260ENST00000637578 CYP11B1P15538 503 aa20■□□□□ 0.79
CLN3-260ENST00000637578 GABRG2P18507 467 aa20■□□□□ 0.79
CLN3-260ENST00000637578 CDH5P33151 784 aaPredicted RBP20■□□□□ 0.79
CLN3-260ENST00000637578 WASP42768 502 aa20■□□□□ 0.79
CLN3-260ENST00000637578 KLK7P49862 253 aa20■□□□□ 0.79
CLN3-260ENST00000637578 SGSHP51688 502 aa20■□□□□ 0.79
CLN3-260ENST00000637578 ARHGAP8P85298 464 aa20■□□□□ 0.79
CLN3-260ENST00000637578 RAPGEF1Q13905 1077 aa20■□□□□ 0.79
CLN3-260ENST00000637578 EIF4HQ15056 248 aaKnown RBP20■□□□□ 0.79
CLN3-260ENST00000637578 MAP7D1Q3KQU3 841 aa20■□□□□ 0.79
CLN3-260ENST00000637578 FILIP1LQ4L180 1135 aa20■□□□□ 0.79
CLN3-260ENST00000637578 PLA2G2CQ5R387 149 aa20■□□□□ 0.79
CLN3-260ENST00000637578 TMEM215Q68D42 235 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms