RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ARCQ7LC44 396 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 PHF13Q86YI8 300 aaPredicted RBP21.53■■□□□ 1.04
CLN3-240ENST00000631023 RNF34Q969K3 372 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 C11orf70Q9BRQ4 267 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 PLK2Q9NYY3 685 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 ADAM22Q9P0K1 906 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 CAPN11Q9UMQ6 739 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 ITIH6Q6UXX5 1313 aa21.52■■□□□ 1.04
CLN3-240ENST00000631023 PENKP01210 267 aaPredicted RBP21.52■■□□□ 1.04
CLN3-240ENST00000631023 ZBED6P86452 979 aa21.52■■□□□ 1.04
CLN3-240ENST00000631023 KDSRQ06136 332 aa21.52■■□□□ 1.04
CLN3-240ENST00000631023 MTA1Q13330 715 aa21.52■■□□□ 1.04
CLN3-240ENST00000631023 GAS6Q14393 721 aa21.52■■□□□ 1.04
CLN3-240ENST00000631023 ZC3H12AQ5D1E8 599 aaKnown RBP21.52■■□□□ 1.04
CLN3-240ENST00000631023 FYB2Q5VWT5 728 aa21.52■■□□□ 1.04
CLN3-240ENST00000631023 CPLX3Q8WVH0 158 aa21.52■■□□□ 1.04
CLN3-240ENST00000631023 SYN2Q92777 582 aaPredicted RBP21.52■■□□□ 1.04
CLN3-240ENST00000631023 TMA16Q96EY4 203 aaKnown RBP21.52■■□□□ 1.04
CLN3-240ENST00000631023 LUC7L2Q9Y383 392 aaKnown RBP21.52■■□□□ 1.04
CLN3-240ENST00000631023 SYNJ2BP-COX16A0A087WUM0 186 aa21.51■■□□□ 1.03
CLN3-240ENST00000631023 K7EQS6 105 aa21.51■■□□□ 1.03
CLN3-240ENST00000631023 M0QYT0 321 aa21.51■■□□□ 1.03
CLN3-240ENST00000631023 ABCB4P21439 1286 aa21.51■■□□□ 1.03
CLN3-240ENST00000631023 CCR1P32246 355 aa21.51■■□□□ 1.03
CLN3-240ENST00000631023 DGKGP49619 791 aa21.51■■□□□ 1.03
CLN3-240ENST00000631023 EIF4EBP2Q13542 120 aaPredicted RBP21.51■■□□□ 1.03
CLN3-240ENST00000631023 ATP6V0D2Q8N8Y2 350 aa21.51■■□□□ 1.03
CLN3-240ENST00000631023 ATOH1Q92858 354 aaPredicted RBP21.51■■□□□ 1.03
CLN3-240ENST00000631023 BTN2A3PQ96KV6 586 aa21.51■■□□□ 1.03
CLN3-240ENST00000631023 HAUS4Q9H6D7 363 aa21.51■■□□□ 1.03
CLN3-240ENST00000631023 COX16Q9P0S2 106 aa21.51■■□□□ 1.03
CLN3-240ENST00000631023 BZW2Q9Y6E2 419 aaKnown RBP21.51■■□□□ 1.03
CLN3-240ENST00000631023 CHURC1-FNTBB4DL54 471 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 MOCS2O96007 188 aaPredicted RBP21.5■■□□□ 1.03
CLN3-240ENST00000631023 F9P00740 461 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 PITX1P78337 314 aaPredicted RBP21.5■■□□□ 1.03
CLN3-240ENST00000631023 CSTF1Q05048 431 aaKnown RBP21.5■■□□□ 1.03
CLN3-240ENST00000631023 NME3Q13232 169 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 ZNF528Q3MIS6 628 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 ACAD10Q6JQN1 1059 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 SND1Q7KZF4 910 aaKnown RBP eCLIP21.5■■□□□ 1.031e-7■■■□□ 15.8
CLN3-240ENST00000631023 PHTF2Q8N3S3 785 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 TERB1Q8NA31 727 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 RPLP0P6Q8NHW5 317 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 EZH1Q92800 747 aaPredicted RBP21.5■■□□□ 1.03
CLN3-240ENST00000631023 NPY6RQ99463 290 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 SLC2A11Q9BYW1 496 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 PRMT8Q9NR22 394 aaPredicted RBP21.5■■□□□ 1.03
CLN3-240ENST00000631023 TMEM59LQ9UK28 342 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 FBXO10Q9UK96 956 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 PAXBP1Q9Y5B6 917 aa21.5■■□□□ 1.03
CLN3-240ENST00000631023 TYW5A2RUC4 315 aaKnown RBP21.49■■□□□ 1.03
CLN3-240ENST00000631023 TSPAN3O60637 253 aa21.49■■□□□ 1.03
CLN3-240ENST00000631023 SP9P0CG40 484 aa21.49■■□□□ 1.03
CLN3-240ENST00000631023 MRPS21P82921 87 aaKnown RBP21.49■■□□□ 1.03
CLN3-240ENST00000631023 C1QBPQ07021 282 aaKnown RBP21.49■■□□□ 1.03
CLN3-240ENST00000631023 PTP4A2Q12974 167 aa21.49■■□□□ 1.03
CLN3-240ENST00000631023 SLC25A52Q3SY17 297 aa21.49■■□□□ 1.03
CLN3-240ENST00000631023 SPECC1LQ69YQ0 1117 aa21.49■■□□□ 1.03
CLN3-240ENST00000631023 MAML2Q8IZL2 1156 aaPredicted RBP21.49■■□□□ 1.03
CLN3-240ENST00000631023 NT5C3BQ969T7 300 aa21.49■■□□□ 1.03
CLN3-240ENST00000631023 ACDQ96AP0 544 aa21.49■■□□□ 1.03
CLN3-240ENST00000631023 SYT11Q9BT88 431 aa21.49■■□□□ 1.03
CLN3-240ENST00000631023 SULT1E1P49888 294 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 SEC13P55735 322 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 GSCP56915 257 aaPredicted RBP21.48■■□□□ 1.03
CLN3-240ENST00000631023 MESP2Q0VG99 397 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 TRIM14Q14142 442 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 C2orf27AQ580R0 203 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 FAM133BQ5BKY9 247 aaKnown RBP21.48■■□□□ 1.03
CLN3-240ENST00000631023 MPP7Q5T2T1 576 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 PIK3R6Q5UE93 754 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 E4F1Q66K89 784 aaPredicted RBP21.48■■□□□ 1.03
CLN3-240ENST00000631023 MON1BQ7L1V2 547 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 KCNV2Q8TDN2 545 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 USP33Q8TEY7 942 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 FAM126AQ9BYI3 521 aaPredicted RBP21.48■■□□□ 1.03
CLN3-240ENST00000631023 METTL5Q9NRN9 209 aaKnown RBP21.48■■□□□ 1.03
CLN3-240ENST00000631023 SLC27A6Q9Y2P4 619 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 GOLGA6L7A0A1B0GV03 622 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 KCNU1A8MYU2 1149 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 GFRA2O00451 464 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 PAPSS2O95340 614 aaPredicted RBP21.48■■□□□ 1.03
CLN3-240ENST00000631023 GYPCP04921 128 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 CISD3P0C7P0 127 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 KRT3P12035 628 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 SKILP12757 684 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 FLT3P36888 993 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 NRLP54845 237 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 SATB1Q01826 763 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 NHLH1Q02575 133 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 HSF5Q4G112 596 aaPredicted RBP21.48■■□□□ 1.03
CLN3-240ENST00000631023 C10orf76Q5T2E6 689 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 NADSYN1Q6IA69 706 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 RFWD3Q6PCD5 774 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 ZNF571Q7Z3V5 609 aaPredicted RBP21.48■■□□□ 1.03
CLN3-240ENST00000631023 VPS36Q86VN1 386 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 PGAP3Q96FM1 320 aaPredicted RBP21.48■■□□□ 1.03
CLN3-240ENST00000631023 VCPIP1Q96JH7 1222 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 SELENOOQ9BVL4 669 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms