RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 CCNJLQ8IV13 435 aa16.9■□□□□ 0.3
LDB3-208ENST00000623007 LRRC43Q8N309 656 aa16.9■□□□□ 0.3
LDB3-208ENST00000623007 LZTR1Q8N653 840 aa16.9■□□□□ 0.3
LDB3-208ENST00000623007 ARHGEF2Q92974 986 aaKnown RBP16.9■□□□□ 0.3
LDB3-208ENST00000623007 PPP1R2P1Q96PQ5 205 aa16.9■□□□□ 0.3
LDB3-208ENST00000623007 ADAM33Q9BZ11 813 aa16.9■□□□□ 0.3
LDB3-208ENST00000623007 SMOC2Q9H3U7 446 aa16.9■□□□□ 0.3
LDB3-208ENST00000623007 LRRC4CQ9HCJ2 640 aa16.9■□□□□ 0.3
LDB3-208ENST00000623007 SCML2Q9UQR0 700 aa16.9■□□□□ 0.3
LDB3-208ENST00000623007 CLUHO75153 1309 aa16.9■□□□□ 0.3
LDB3-208ENST00000623007 NLRC5Q86WI3 1866 aa16.89■□□□□ 0.3
LDB3-208ENST00000623007 TANC1Q9C0D5 1861 aa16.89■□□□□ 0.3
LDB3-208ENST00000623007 A0A0A0MRY4 1105 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 AP3B1O00203 1094 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 IGLV3-25P01717 112 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 AMPD1P23109 780 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 CCR1P32246 355 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 STX2P32856 288 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 SLC5A3P53794 718 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 SLC18A1P54219 525 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 ATXN1P54253 815 aaKnown RBP16.89■□□□□ 0.29
LDB3-208ENST00000623007 GEMIN4P57678 1058 aaKnown RBP16.89■□□□□ 0.29
LDB3-208ENST00000623007 PRKD1Q15139 912 aaPredicted RBP16.89■□□□□ 0.29
LDB3-208ENST00000623007 LONRF1Q17RB8 773 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 VARS2Q5ST30 1063 aaKnown RBP16.89■□□□□ 0.29
LDB3-208ENST00000623007 HFE2Q6ZVN8 426 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 ANKS3Q6ZW76 656 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 BHLHA9Q7RTU4 235 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 GPRIN1Q7Z2K8 1008 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 PRUNE1Q86TP1 453 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 LRRTM3Q86VH5 581 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 NUP93Q8N1F7 819 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 ZBTB9Q96C00 473 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 SPATA13Q96N96 652 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 SERPINB11Q96P15 392 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 CASD1Q96PB1 797 aa16.89■□□□□ 0.29
LDB3-208ENST00000623007 OLA1Q9NTK5 396 aaKnown RBP16.89■□□□□ 0.29
LDB3-208ENST00000623007 TRDMT1O14717 391 aaKnown RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 TNFRSF10BO14763 440 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 FGF10O15520 208 aaPredicted RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 CREB3O43889 395 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 ITGB1P05556 798 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 FGFR3P22607 806 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 CACNA2D1P54289 1103 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 NRG1Q02297 640 aaPredicted RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 GBE1Q04446 702 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 SEMA5AQ13591 1074 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 CTXN3Q4LDR2 81 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 SLC39A12Q504Y0 691 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 B4GALNT4Q76KP1 1039 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 LRRC49Q8IUZ0 686 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 BCAS4Q8TDM0 211 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 SH3TC2Q8TF17 1288 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 RNF34Q969K3 372 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 DEFB118Q96PH6 123 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 NAT9Q9BTE0 207 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 FAM107BQ9H098 131 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 HIPK3Q9H422 1215 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 CCDC134Q9H6E4 229 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 TMLHEQ9NVH6 421 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 ARHGEF38Q9NXL2 777 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 PSMC3IPQ9P2W1 217 aaPredicted RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 SMIM23A6NLE4 172 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 ERI2A8K979 691 aaKnown RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 DCLK1O15075 740 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 IRAK2O43187 625 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 FAM107AO95990 144 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 LRRC31Q6UY01 552 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 DQX1Q8TE96 717 aaKnown RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 NDRG1Q92597 394 aaKnown RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 CDK5RAP1Q96SZ6 601 aaKnown RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 CYTH2Q99418 400 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 TKTL2Q9H0I9 626 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 RNF208Q9H0X6 261 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 ACSS3Q9H6R3 686 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 CATSPERBQ9H7T0 1116 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 SSU72Q9NP77 194 aaKnown RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 INTS9Q9NV88 658 aaKnown RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 TMEM30AQ9NV96 361 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 DNAJC17Q9NVM6 304 aaKnown RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 OR12D3Q9UGF7 316 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 TRHDEQ9UKU6 1024 aa16.88■□□□□ 0.29
LDB3-208ENST00000623007 PRG3Q9Y2Y8 225 aaPredicted RBP16.88■□□□□ 0.29
LDB3-208ENST00000623007 SYNJ2BP-COX16A0A087WUM0 186 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 GMNCA6NCL1 334 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 TMEM63AO94886 807 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 CCL5P13501 91 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 SLCO1A2P46721 670 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 RPL10AP62906 217 aaKnown RBP16.87■□□□□ 0.29
LDB3-208ENST00000623007 GUCY1A3Q02108 690 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 EIF4EBP2Q13542 120 aaPredicted RBP16.87■□□□□ 0.29
LDB3-208ENST00000623007 PARP6Q2NL67 630 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 FAM171A1Q5VUB5 890 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 MSANTD2Q6P1R3 559 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 C3orf62Q6ZUJ4 267 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 UHMK1Q8TAS1 419 aaKnown RBP16.87■□□□□ 0.29
LDB3-208ENST00000623007 ALKBH8Q96BT7 664 aaKnown RBP16.87■□□□□ 0.29
LDB3-208ENST00000623007 HDAC11Q96DB2 347 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 SPATA17Q96L03 361 aa16.87■□□□□ 0.29
LDB3-208ENST00000623007 ABI2Q9NYB9 513 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms