RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 LHX8Q68G74 356 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 PRDM12Q9H4Q4 367 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 ENTPD7Q9NQZ7 604 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 ABCC13Q9NSE7 274 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 SCN1AP35498 2009 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 PMPCBO75439 489 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 DAB1O75553 588 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 SSTR1P30872 391 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 GDF10P55107 478 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.24■□□□□ 0.197e-8■■■□□ 18.9
CPSF1-213ENST00000620219 TRMT10CQ7L0Y3 403 aaKnown RBP16.24■□□□□ 0.19
CPSF1-213ENST00000620219 C4orf33Q8N1A6 199 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 FBXO36Q8NEA4 188 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 GCNAQ96QF7 691 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 KCTD15Q96SI1 283 aaPredicted RBP16.24■□□□□ 0.19
CPSF1-213ENST00000620219 TLR8Q9NR97 1041 aaKnown RBP16.24■□□□□ 0.19
CPSF1-213ENST00000620219 MPP6Q9NZW5 540 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 GMIPQ9P107 970 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 PCDHB12Q9Y5F1 795 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 CFAP69A5D8W1 941 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 TRDMT1O14717 391 aaKnown RBP16.24■□□□□ 0.19
CPSF1-213ENST00000620219 BRAFP15056 766 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 ADRA1BP35368 520 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 TMEM199Q8N511 208 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 PLD5Q8N7P1 536 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 IPMKQ8NFU5 416 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 CSPG4P5Q96PW8 444 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 MARCH2Q9P0N8 246 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 PCDHB8Q9UN66 801 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 GOLGA6L7A0A1B0GV03 622 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 NBNO60934 754 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 MT-ND3P03897 115 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 CKMP06732 381 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 SLC25A11Q02978 314 aaKnown RBP16.23■□□□□ 0.19
CPSF1-213ENST00000620219 ANKS3Q6ZW76 656 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 C10orf67Q8IYJ2 551 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 ALLCQ8N6M5 410 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 PCDH19Q8TAB3 1148 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 LRRC4CQ9HCJ2 640 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 PIGVQ9NUD9 493 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 TMLHEQ9NVH6 421 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 MYO18AQ92614 2054 aaKnown RBP16.23■□□□□ 0.19
CPSF1-213ENST00000620219 IL31Q6EBC2 164 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 PDCD7Q8N8D1 485 aaKnown RBP16.23■□□□□ 0.19
CPSF1-213ENST00000620219 DQX1Q8TE96 717 aaKnown RBP16.23■□□□□ 0.19
CPSF1-213ENST00000620219 KIF9Q9HAQ2 790 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 ZDHHC18Q9NUE0 388 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 TSPAN3O60637 253 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 ENDOD1O94919 500 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 PFKMP08237 780 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 COG7P83436 770 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 SIX1Q15475 284 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-213ENST00000620219 LRRTM3Q86VH5 581 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 COLGALT1Q8NBJ5 622 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 GSTCDQ8NEC7 633 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 PIK3R5Q8WYR1 880 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 CDKL2Q92772 493 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 TRPM5Q9NZQ8 1165 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 CLTBP09497 229 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 HARS2P49590 506 aaKnown RBP16.23■□□□□ 0.19
CPSF1-213ENST00000620219 FASTKD3Q14CZ7 662 aaKnown RBP16.23■□□□□ 0.19
CPSF1-213ENST00000620219 TAC4Q86UU9 113 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 HTR3CQ8WXA8 447 aa16.23■□□□□ 0.19
CPSF1-213ENST00000620219 AVILO75366 819 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 CACNA2D1P54289 1103 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 SLC39A5Q6ZMH5 540 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 ELMOD1Q8N336 334 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 CATSPERBQ9H7T0 1116 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 ARID2Q68CP9 1835 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 RNF103O00237 685 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 PPFIA2O75334 1257 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 TGM2P21980 687 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 LSP1P33241 339 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 LRIG3Q6UXM1 1119 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 STRADAQ7RTN6 431 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 RTN4RL1Q86UN2 441 aaPredicted RBP16.22■□□□□ 0.19
CPSF1-213ENST00000620219 TTC25Q96NG3 672 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 ATXN3LQ9H3M9 355 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 PIDD1Q9HB75 910 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 BFARQ9NZS9 450 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 TRIP11Q15643 1979 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 E2F8A0AVK6 867 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 GOLGA8CPA6NN73 597 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 MBL2P11226 248 aaPredicted RBP16.22■□□□□ 0.19
CPSF1-213ENST00000620219 CRADDP78560 199 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 RFX8Q6ZV50 586 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 PLCD3Q8N3E9 789 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 MREGQ8N565 214 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 SLC25A41Q8N5S1 370 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 ART4Q93070 314 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 AAASQ9NRG9 546 aa16.22■□□□□ 0.19
CPSF1-213ENST00000620219 CHN1P15882 459 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 MDH1P40925 334 aaKnown RBP16.21■□□□□ 0.19
CPSF1-213ENST00000620219 MBTPS1Q14703 1052 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 RAP1GAP2Q684P5 730 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 NSRP1Q9H0G5 558 aaKnown RBP16.21■□□□□ 0.19
CPSF1-213ENST00000620219 ALG13Q9NP73 1137 aaKnown RBP16.21■□□□□ 0.19
CPSF1-213ENST00000620219 ZMYND8Q9ULU4 1186 aaPredicted RBP16.21■□□□□ 0.19
CPSF1-213ENST00000620219 MFHAS1Q9Y4C4 1052 aa16.21■□□□□ 0.19
CPSF1-213ENST00000620219 TRIM66O15016 1216 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms