RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 F9P00740 461 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 IGLV3-27P01718 113 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 FYNP06241 537 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 DESP17661 470 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 TNFAIP3P21580 790 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 CCR1P32246 355 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 TIE1P35590 1138 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 MATKP42679 507 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 NOMO3P69849 1222 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 C10orf76Q5T2E6 689 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 SYPL2Q5VXT5 272 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 NAIF1Q69YI7 327 aaPredicted RBP20.12■□□□□ 0.81
UPF1-212ENST00000601689 TSSK4Q6SA08 328 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 FAM217AQ8IXS0 508 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 MAML2Q8IZL2 1156 aaPredicted RBP20.12■□□□□ 0.81
UPF1-212ENST00000601689 ADAM32Q8TC27 787 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 BTN2A3PQ96KV6 586 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 NAP1L5Q96NT1 182 aaPredicted RBP20.12■□□□□ 0.81
UPF1-212ENST00000601689 SLC2A13Q96QE2 648 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 DDIT4Q9NX09 232 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 STOML2Q9UJZ1 356 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 KIAA1549LQ6ZVL6 1849 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 MYO18AQ92614 2054 aaKnown RBP20.11■□□□□ 0.81
UPF1-212ENST00000601689 SYNJ2BP-COX16A0A087WUM0 186 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 MOCS2O96007 188 aaPredicted RBP20.11■□□□□ 0.81
UPF1-212ENST00000601689 PENKP01210 267 aaPredicted RBP20.11■□□□□ 0.81
UPF1-212ENST00000601689 CNR2P34972 360 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 FMO1Q01740 532 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 ASIC2Q16515 512 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 MPP7Q5T2T1 576 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 SFMBT2Q5VUG0 894 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 FYB2Q5VWT5 728 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 ZNF513Q8N8E2 541 aaPredicted RBP20.11■□□□□ 0.81
UPF1-212ENST00000601689 USP33Q8TEY7 942 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 SLC20A1Q8WUM9 679 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 AGPAT1Q99943 283 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 POLMQ9NP87 494 aaPredicted RBP20.11■□□□□ 0.81
UPF1-212ENST00000601689 COX16Q9P0S2 106 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 RAB23Q9ULC3 237 aa20.11■□□□□ 0.81
UPF1-212ENST00000601689 CACNA1HO95180 2353 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 PROB1E7EW31 1015 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 M0QYT0 321 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 TSPAN3O60637 253 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 CYP1A1P04798 512 aaPredicted RBP20.1■□□□□ 0.81
UPF1-212ENST00000601689 CALB1P05937 261 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 HOXA6P31267 233 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 NME3Q13232 169 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 DMC1Q14565 340 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 FIGNQ5HY92 759 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 LONP2Q86WA8 852 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 XYLT1Q86Y38 959 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 FCRL2Q96LA5 508 aaPredicted RBP20.1■□□□□ 0.81
UPF1-212ENST00000601689 MMP17Q9ULZ9 603 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 SLC27A6Q9Y2P4 619 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 STARD13Q9Y3M8 1113 aa20.1■□□□□ 0.81
UPF1-212ENST00000601689 FANCMQ8IYD8 2048 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 CCDC163A0A0D9SF12 145 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 ANKRD62A6NC57 917 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 GOLGA8SH3BPF8 625 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 NPC1O15118 1278 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 TIMM44O43615 452 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 APBB3O95704 486 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 DGKEP52429 567 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 TAF5Q15542 800 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 ZC3H12AQ5D1E8 599 aaKnown RBP20.09■□□□□ 0.81
UPF1-212ENST00000601689 ACBD5Q5T8D3 534 aaPredicted RBP20.09■□□□□ 0.81
UPF1-212ENST00000601689 ANKS1BQ7Z6G8 1248 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 HJURPQ8NCD3 748 aaPredicted RBP20.09■□□□□ 0.81
UPF1-212ENST00000601689 TSTD1Q8NFU3 115 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 SLC39A13Q96H72 371 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 SELENOOQ9BVL4 669 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 ADAM22Q9P0K1 906 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 FBXO10Q9UK96 956 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.09■□□□□ 0.81
UPF1-212ENST00000601689 R4GN57 208 aa20.09■□□□□ 0.81
UPF1-212ENST00000601689 LRRC53A6NM62 1247 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 F5H5T6 163 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 TBL1XO60907 577 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 KLF8O95600 359 aaPredicted RBP20.08■□□□□ 0.81
UPF1-212ENST00000601689 IGLV3-25P01717 112 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 LMNAP02545 664 aaKnown RBP20.08■□□□□ 0.81
UPF1-212ENST00000601689 TPM1P09493 284 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 MMP8P22894 467 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 SULT1E1P49888 294 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 CENPCQ03188 943 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 DEUP1Q05D60 604 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 EIF4HQ15056 248 aaKnown RBP20.08■□□□□ 0.81
UPF1-212ENST00000601689 PIK3R6Q5UE93 754 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 HEATR6Q6AI08 1181 aaKnown RBP20.08■□□□□ 0.81
UPF1-212ENST00000601689 MMS22LQ6ZRQ5 1243 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 ARCQ7LC44 396 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 VPS36Q86VN1 386 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 CHSY1Q86X52 802 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 CHPFQ8IZ52 775 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 CCDC33Q8N5R6 958 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 TXNDC5Q8NBS9 432 aaKnown RBP20.08■□□□□ 0.81
UPF1-212ENST00000601689 ZBTB44Q8NCP5 570 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 WFIKKN2Q8TEU8 576 aa20.08■□□□□ 0.81
UPF1-212ENST00000601689 PIWIL1Q96J94 861 aaKnown RBP20.08■□□□□ 0.81
UPF1-212ENST00000601689 C11orf70Q9BRQ4 267 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms