RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 IFNKQ9P0W0 207 aa17.52■□□□□ 0.4
TRIM28-215ENST00000601150 LRRC53A6NM62 1247 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 GOLGA8SH3BPF8 625 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 GFRA2O00451 464 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 TRIM24O15164 1050 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 TSPAN3O60637 253 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 UNGP13051 313 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-215ENST00000601150 TDGF1P13385 188 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 PBX1P40424 430 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 NBL1P41271 181 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 NRLP54845 237 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 RNASE9P60153 205 aaKnown RBP17.51■□□□□ 0.39
TRIM28-215ENST00000601150 EIF4EBP2Q13542 120 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-215ENST00000601150 ASIC2Q16515 512 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 CLEC16AQ2KHT3 1053 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 C2orf27AQ580R0 203 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 ZC3H12AQ5D1E8 599 aaKnown RBP17.51■□□□□ 0.39
TRIM28-215ENST00000601150 C10orf76Q5T2E6 689 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 ZC3H14Q6PJT7 736 aaKnown RBP17.51■□□□□ 0.39
TRIM28-215ENST00000601150 MMS22LQ6ZRQ5 1243 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 SLC30A5Q8TAD4 765 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 NELL1Q92832 810 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 P2RY11Q96G91 374 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.51■□□□□ 0.39
TRIM28-215ENST00000601150 C2orf42Q9NWW7 574 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.51■□□□□ 0.392e-6■■□□□ 11.5
TRIM28-215ENST00000601150 FBXO10Q9UK96 956 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 SLC8A2Q9UPR5 921 aa17.51■□□□□ 0.39
TRIM28-215ENST00000601150 GOLGA6L7A0A1B0GV03 622 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 K7ESF4 209 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 MOCS2O96007 188 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-215ENST00000601150 TPM3P06753 285 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 CISD3P0C7P0 127 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 SLC2A3P11169 496 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 KIR2DL1P43626 348 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-215ENST00000601150 NSFP46459 744 aaKnown RBP17.5■□□□□ 0.39
TRIM28-215ENST00000601150 CENPCQ03188 943 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 FAM133BQ5BKY9 247 aaKnown RBP17.5■□□□□ 0.39
TRIM28-215ENST00000601150 SFMBT2Q5VUG0 894 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 SYT13Q7L8C5 426 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 ATP6V0D2Q8N8Y2 350 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 RNF34Q969K3 372 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 TMA16Q96EY4 203 aaKnown RBP17.5■□□□□ 0.39
TRIM28-215ENST00000601150 BTN2A3PQ96KV6 586 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 PHOX2BQ99453 314 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 C11orf70Q9BRQ4 267 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 SLC2A11Q9BYW1 496 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 ZSCAN32Q9NX65 697 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 AIPL1Q9NZN9 384 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 SLC12A6Q9UHW9 1150 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 STAP1Q9ULZ2 295 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 SLC27A6Q9Y2P4 619 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 PCDHGA2Q9Y5H1 932 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 R4GN57 208 aa17.5■□□□□ 0.39
TRIM28-215ENST00000601150 MYO18AQ92614 2054 aaKnown RBP17.5■□□□□ 0.39
TRIM28-215ENST00000601150 SYNJ2BP-COX16A0A087WUM0 186 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 PROB1E7EW31 1015 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 M0QYT0 321 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 HOXD9P28356 352 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-215ENST00000601150 HOXA6P31267 233 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 SLC6A4P31645 630 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 CCR1P32246 355 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 TIE1P35590 1138 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 NME3Q13232 169 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 DMC1Q14565 340 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 HSF5Q4G112 596 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-215ENST00000601150 PIK3R6Q5UE93 754 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 NADSYN1Q6IA69 706 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 RFWD3Q6PCD5 774 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 ARCQ7LC44 396 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 PHF13Q86YI8 300 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-215ENST00000601150 ZBTB44Q8NCP5 570 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 KCNV2Q8TDN2 545 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 ATRIPQ8WXE1 791 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 IQCDQ96DY2 449 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 NPY6RQ99463 290 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 XPO4Q9C0E2 1151 aaKnown RBP17.49■□□□□ 0.39
TRIM28-215ENST00000601150 ADAM22Q9P0K1 906 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 COX16Q9P0S2 106 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 STARD13Q9Y3M8 1113 aa17.49■□□□□ 0.39
TRIM28-215ENST00000601150 A0A1W2PQJ5 194 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 ANTXRLA6NF34 631 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 KCNU1A8MYU2 1149 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 KLF8O95600 359 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-215ENST00000601150 F9P00740 461 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 CALB1P05937 261 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 CHRM1P11229 460 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-215ENST00000601150 ABCB4P21439 1286 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 TNFAIP3P21580 790 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 SULT1E1P49888 294 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 PTP4A2Q12974 167 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 MTA1Q13330 715 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 SLC25A52Q3SY17 297 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 MPP7Q5T2T1 576 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 EMC10Q5UCC4 262 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 CCDC33Q8N5R6 958 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 ALLCQ8N6M5 410 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 IL17RCQ8NAC3 791 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 HJURPQ8NCD3 748 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-215ENST00000601150 RNF214Q8ND24 703 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms