RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TDGF1P13385 188 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 TYRP14679 529 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 MTAPQ13126 283 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 RAB6CQ53S08 254 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 ZC3H12AQ5D1E8 599 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 DGKKQ5KSL6 1271 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 NUGGCQ68CJ6 796 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 SPECC1LQ69YQ0 1117 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 MAMSTRQ6ZN01 415 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 TPGS1Q6ZTW0 290 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 PHLDB2Q86SQ0 1253 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 MCOLN2Q8IZK6 566 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 NAT16Q8N8M0 369 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 CPLX3Q8WVH0 158 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 PRICKLE1Q96MT3 831 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 RAB6CQ9H0N0 254 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 METTL5Q9NRN9 209 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 ADAM22Q9P0K1 906 aa20.28■□□□□ 0.84
SHKBP1-221ENST00000599833 NEDD8-MDP1E9PL57 170 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 GOLGA8SH3BPF8 625 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 ACSL4O60488 711 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 DRD1P21728 446 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 HOXD9P28356 352 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 HOXC13P31276 330 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 CHKAP35790 457 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 NSFP46459 744 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 HARS2P49590 506 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 ATXN1P54253 815 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 CDK17Q00537 523 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 AMPD2Q01433 879 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 C1QBPQ07021 282 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 KLHL30Q0D2K2 578 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 ADGRF1Q5T601 910 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 EMC1Q8N766 993 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 C3orf20Q8ND61 904 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 TBCBQ99426 244 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 DNAJC7Q99615 494 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 PRMT1Q99873 361 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 BBS2Q9BXC9 721 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 NUCKS1Q9H1E3 243 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 KCNH6Q9H252 994 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 PRMT8Q9NR22 394 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 PIGVQ9NUD9 493 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 PLK2Q9NYY3 685 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 ARHGAP20Q9P2F6 1191 aa20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 LUC7L2Q9Y383 392 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-221ENST00000599833 C2CD4BA6NLJ0 364 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 ENDOD1O94919 500 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 TNFAIP3P21580 790 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 RNASE9P60153 205 aaKnown RBP20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 GRSF1Q12849 480 aaKnown RBP eCLIP20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 ANO4Q32M45 955 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 SLC25A52Q3SY17 297 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 PIK3R6Q5UE93 754 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 RFWD3Q6PCD5 774 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 C1orf210Q8IVY1 113 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 UNC45BQ8IWX7 931 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 SYNPOQ8N3V7 929 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 MSANTD4Q8NCY6 345 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 DDIT4Q9NX09 232 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 WDR35Q9P2L0 1181 aa20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 MUC22E2RYF6 1773 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-221ENST00000599833 M0QYT0 321 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 NCAM2O15394 837 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 GZMAP12544 262 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 RRM1P23921 792 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 KIR2DL1P43626 348 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 CXCR3P49682 368 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 LRRC32Q14392 662 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 PPP2R5DQ14738 602 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 CCDC14Q49A88 953 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 BHMTQ93088 406 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 LMLNQ96KR4 655 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 CFAP57Q96MR6 1250 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 PNKPQ96T60 521 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 IER2Q9BTL4 223 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 ISCUQ9H1K1 167 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 FAM204AQ9H8W3 233 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 SEPT11Q9NVA2 429 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 ARHGEF38Q9NXL2 777 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 RRN3Q9NYV6 651 aa20.25■□□□□ 0.83
SHKBP1-221ENST00000599833 CHURC1-FNTBB4DL54 471 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 TSPAN3O60637 253 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 RNF40O75150 1001 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 KAT7O95251 611 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 ADCY5O95622 1261 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 SERPING1P05155 500 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 CALB1P05937 261 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 TPM3P06753 285 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 RFC1P35251 1148 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 KDSRQ06136 332 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 ANGPT1Q15389 498 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 ASTE1Q2TB18 679 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 SH3PXD2AQ5TCZ1 1133 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 ZNF683Q8IZ20 524 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 TERB1Q8NA31 727 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 WFDC5Q8TCV5 224 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 RXFP2Q8WXD0 754 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms