RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 MSI1O43347 362 aaKnown RBP10.22□□□□□ -0.77
VRK3-216ENST00000599342 TIMM44O43615 452 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 TSPAN3O60637 253 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 EPHX1P07099 455 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 SYPP08247 313 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 SERPINF2P08697 491 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 ACADMP11310 421 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 GNSP15586 552 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 BRD2P25440 801 aaKnown RBP10.22□□□□□ -0.77
VRK3-216ENST00000599342 HOXD9P28356 352 aaPredicted RBP10.22□□□□□ -0.77
VRK3-216ENST00000599342 SLC11A2P49281 568 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 GCNT1Q02742 428 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 PAK1Q13153 545 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 ZNF234Q14588 700 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 CNGA2Q16280 664 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 PKDCCQ504Y2 493 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 WDR45BQ5MNZ6 344 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 ADGRF1Q5T601 910 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 NUGGCQ68CJ6 796 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 RRAGAQ7L523 313 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 SLC41A1Q8IVJ1 513 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 UNC45BQ8IWX7 931 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 WFIKKN2Q8TEU8 576 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 SLC35F5Q8WV83 523 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 IRGQQ8WZA9 623 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 TFAP2BQ92481 460 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 PRCCQ92733 491 aaPredicted RBP10.22□□□□□ -0.77
VRK3-216ENST00000599342 KAT5Q92993 513 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 TMA16Q96EY4 203 aaKnown RBP10.22□□□□□ -0.77
VRK3-216ENST00000599342 SIPA1Q96FS4 1042 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 CD93Q9NPY3 652 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 SUSD2Q9UGT4 822 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.22□□□□□ -0.77
VRK3-216ENST00000599342 TNRC6BQ9UPQ9 1833 aaKnown RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 TYW5A2RUC4 315 aaKnown RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 PPP1R3GB7ZBB8 358 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 SART1O43290 800 aaKnown RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 OPHN1O60890 802 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 FBXO21O94952 628 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 FGFR1OPO95684 399 aaKnown RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 AFPP02771 609 aaKnown RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 LTFP02788 710 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 NCAM1P13591 858 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 KRT5P13647 590 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 OXTRP30559 389 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 STX17P56962 302 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 KCNH2Q12809 1159 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 FOXC1Q12948 553 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 ENPP2Q13822 863 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 MORC3Q14149 939 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 PLEKHG6Q3KR16 790 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 FNDC3BQ53EP0 1204 aaKnown RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 PMF1Q6P1K2 205 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 MSANTD2Q6P1R3 559 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 METTL3Q86U44 580 aaKnown RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 CACUL1Q86Y37 369 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 TMPRSS6Q8IU80 811 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 ARHGEF19Q8IW93 802 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 TRIM59Q8IWR1 403 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 AHI1Q8N157 1196 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 ZNF557Q8N988 423 aaPredicted RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 EHBP1Q8NDI1 1231 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 DEFB124Q8NES8 71 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 SORCS1Q8WY21 1168 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 FAM149B1Q96BN6 582 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 TOE1Q96GM8 510 aaKnown RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 ZNF419Q96HQ0 510 aaPredicted RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 HSFY1Q96LI6 401 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 MKRN2Q9H000 416 aaKnown RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 MIS12Q9H081 205 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 CAPN10Q9HC96 672 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 FSCN3Q9NQT6 498 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 ST7Q9NRC1 585 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 USP36Q9P275 1121 aaKnown RBP10.21□□□□□ -0.77
VRK3-216ENST00000599342 STOML2Q9UJZ1 356 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 CLEC4EQ9ULY5 219 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 PLA2G4CQ9UP65 541 aa10.21□□□□□ -0.77
VRK3-216ENST00000599342 MYO18AQ92614 2054 aaKnown RBP10.21□□□□□ -0.78
VRK3-216ENST00000599342 RNF225M0QZC1 329 aaPredicted RBP10.2□□□□□ -0.78
VRK3-216ENST00000599342 ARHGAP33O14559 1287 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 IRAK2O43187 625 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 MED7O43513 233 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 TBL1XO60907 577 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 PABPC1P11940 636 aaKnown RBP10.2□□□□□ -0.78
VRK3-216ENST00000599342 BMP6P22004 513 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 PRKCHP24723 683 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 HLA-FP30511 346 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 ACADSBP45954 432 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 TPMTP51580 245 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 MARSP56192 900 aaKnown RBP10.2□□□□□ -0.78
VRK3-216ENST00000599342 TBX4P57082 545 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 RING1Q06587 406 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 TMEM215Q68D42 235 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 CHST9Q7L1S5 443 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 CREBRFQ8IUR6 639 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 CCDC117Q8IWD4 279 aaPredicted RBP10.2□□□□□ -0.78
VRK3-216ENST00000599342 MINDY1Q8N5J2 469 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 LMO3Q8TAP4 145 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 CLEC4CQ8WTT0 213 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 CYB5D2Q8WUJ1 264 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms