RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 CACNA2D2Q9NY47 1150 aa12.66□□□□□ -0.38
LIG1-217ENST00000599165 XPO7Q9UIA9 1087 aaKnown RBP12.66□□□□□ -0.38
LIG1-217ENST00000599165 MBD1Q9UIS9 605 aaPredicted RBP12.66□□□□□ -0.38
LIG1-217ENST00000599165 RAB23Q9ULC3 237 aa12.66□□□□□ -0.38
LIG1-217ENST00000599165 RAD54BQ9Y620 910 aa12.66□□□□□ -0.38
LIG1-217ENST00000599165 EPHB6O15197 1021 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 MED7O43513 233 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 LRP3O75074 770 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 ERBB2P04626 1255 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 NCAM1P13591 858 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 HOXB2P14652 356 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 EEF1GP26641 437 aaKnown RBP12.65□□□□□ -0.38
LIG1-217ENST00000599165 HLA-FP30511 346 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 NTSR1P30989 418 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 USP8P40818 1118 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 ACADSBP45954 432 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 HARS2P49590 506 aaKnown RBP12.65□□□□□ -0.38
LIG1-217ENST00000599165 RING1Q06587 406 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 DRAP1Q14919 205 aaPredicted RBP12.65□□□□□ -0.38
LIG1-217ENST00000599165 NCAPHQ15003 741 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 KRT31Q15323 416 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 CSRP2Q16527 193 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 RSPO4Q2I0M5 234 aaPredicted RBP12.65□□□□□ -0.38
LIG1-217ENST00000599165 PTPN20Q4JDL3 420 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 ADGRF1Q5T601 910 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 OTUD1Q5VV17 481 aaPredicted RBP12.65□□□□□ -0.38
LIG1-217ENST00000599165 PMS2CLQ68D20 193 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 SMYD5Q6GMV2 418 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 RFWD3Q6PCD5 774 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 PRR23CQ6ZRP0 262 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 APTXQ7Z2E3 356 aaKnown RBP12.65□□□□□ -0.38
LIG1-217ENST00000599165 KIAA0907Q7Z7F0 614 aaPredicted RBP12.65□□□□□ -0.38
LIG1-217ENST00000599165 C1orf131Q8NDD1 294 aaKnown RBP12.65□□□□□ -0.38
LIG1-217ENST00000599165 SORCS1Q8WY21 1168 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 LOXL4Q96JB6 756 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 ADAM33Q9BZ11 813 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 SLC6A17Q9H1V8 727 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 LHX5Q9H2C1 402 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 ARRDC1-AS1Q9H2J1 176 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 SMOC1Q9H4F8 434 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 PLCB1Q9NQ66 1216 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 FANCLQ9NW38 375 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 TMEM63CQ9P1W3 806 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 USP18Q9UMW8 372 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 NUMA1Q14980 2115 aa12.65□□□□□ -0.38
LIG1-217ENST00000599165 NYNRINQ9P2P1 1898 aaKnown RBP12.64□□□□□ -0.39
LIG1-217ENST00000599165 IRAK2O43187 625 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 GDF9O60383 454 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 ACSL4O60488 711 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 UCHL3P15374 230 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 ZNF18P17022 549 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 IL12RB1P42701 662 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 TBX4P57082 545 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 NNTQ13423 1086 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 SF3A2Q15428 464 aaKnown RBP12.64□□□□□ -0.39
LIG1-217ENST00000599165 PREPLQ4J6C6 727 aaPredicted RBP12.64□□□□□ -0.39
LIG1-217ENST00000599165 MPPE1Q53F39 396 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 PIK3R6Q5UE93 754 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 OLFML1Q6UWY5 402 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 FAM183BPQ6ZVS7 135 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 ADIPOR2Q86V24 386 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 CHPFQ8IZ52 775 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 GPR161Q8N6U8 529 aaKnown RBP12.64□□□□□ -0.39
LIG1-217ENST00000599165 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.64□□□□□ -0.39
LIG1-217ENST00000599165 IPO4Q8TEX9 1081 aaKnown RBP12.64□□□□□ -0.39
LIG1-217ENST00000599165 DDI1Q8WTU0 396 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 HMGB4Q8WW32 186 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 AZIN2Q96A70 460 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 FAM149B1Q96BN6 582 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 SLC2A13Q96QE2 648 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 LSM14BQ9BX40 385 aaKnown RBP12.64□□□□□ -0.39
LIG1-217ENST00000599165 SLC2A11Q9BYW1 496 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 CALCOCO1Q9P1Z2 691 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 THAP10Q9P2Z0 257 aaPredicted RBP12.64□□□□□ -0.39
LIG1-217ENST00000599165 TLR6Q9Y2C9 796 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 SIK3Q9Y2K2 1263 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 STON1Q9Y6Q2 735 aa12.64□□□□□ -0.39
LIG1-217ENST00000599165 F8VZ95 297 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 SART1O43290 800 aaKnown RBP12.63□□□□□ -0.39
LIG1-217ENST00000599165 CYP11B1P15538 503 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 NDUFV2P19404 249 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 PRKCHP24723 683 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 CDH5P33151 784 aaPredicted RBP12.63□□□□□ -0.39
LIG1-217ENST00000599165 YWHAZP63104 245 aaKnown RBP12.63□□□□□ -0.39
LIG1-217ENST00000599165 LMNB2Q03252 620 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 PTK2Q05397 1052 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 ZNF234Q14588 700 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 USP39Q53GS9 565 aaKnown RBP12.63□□□□□ -0.39
LIG1-217ENST00000599165 NUGGCQ68CJ6 796 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 TCEAL6Q6IPX3 200 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 TRMT11Q7Z4G4 463 aaKnown RBP12.63□□□□□ -0.39
LIG1-217ENST00000599165 ANKS1BQ7Z6G8 1248 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 NOP9Q86U38 636 aaKnown RBP12.63□□□□□ -0.39
LIG1-217ENST00000599165 TCEAL3Q969E4 200 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 PPP1R13BQ96KQ4 1090 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 SERPINB11Q96P15 392 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 NUCKS1Q9H1E3 243 aaKnown RBP12.63□□□□□ -0.39
LIG1-217ENST00000599165 VPS16Q9H269 839 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 POPDC2Q9HBU9 364 aa12.63□□□□□ -0.39
LIG1-217ENST00000599165 POLMQ9NP87 494 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms