RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CFHR5Q9BXR6 569 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 PIGVQ9NUD9 493 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 SCTRP47872 440 aa20.35■□□□□ 0.85
CLIP3-206ENST00000593074 DEUP1Q05D60 604 aa20.35■□□□□ 0.85
CLIP3-206ENST00000593074 SF3A3Q12874 501 aaKnown RBP eCLIP20.35■□□□□ 0.85
CLIP3-206ENST00000593074 SLC1A5Q15758 541 aa20.35■□□□□ 0.85
CLIP3-206ENST00000593074 TIGD5Q53EQ6 642 aa20.35■□□□□ 0.85
CLIP3-206ENST00000593074 HTR3CQ8WXA8 447 aa20.35■□□□□ 0.85
CLIP3-206ENST00000593074 GLT1D1Q96MS3 346 aa20.35■□□□□ 0.85
CLIP3-206ENST00000593074 PLAC1Q9HBJ0 212 aa20.35■□□□□ 0.85
CLIP3-206ENST00000593074 TMPRSS4Q9NRS4 437 aa20.35■□□□□ 0.85
CLIP3-206ENST00000593074 PRKAG3Q9UGI9 489 aa20.35■□□□□ 0.85
CLIP3-206ENST00000593074 COL4A4P53420 1690 aaPredicted RBP20.35■□□□□ 0.85
CLIP3-206ENST00000593074 YJEFN3A6XGL0 299 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 HHLA1C9JL84 531 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 E7ENQ6 273 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 GSTA2P09210 222 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 PCSK1P29120 753 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 CACNA2D1P54289 1103 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 DPYSQ14117 519 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 PRKD1Q15139 912 aaPredicted RBP20.34■□□□□ 0.85
CLIP3-206ENST00000593074 TTC31Q49AM3 519 aaPredicted RBP20.34■□□□□ 0.85
CLIP3-206ENST00000593074 PACS2Q86VP3 889 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 CNPY4Q8N129 248 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 CCDC33Q8N5R6 958 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 NTAN1Q96AB6 310 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 CFAP36Q96G28 342 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 SMARCD1Q96GM5 515 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 PAIP2Q9BPZ3 127 aaKnown RBP20.34■□□□□ 0.85
CLIP3-206ENST00000593074 PLCD4Q9BRC7 762 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 ZC3H7BQ9UGR2 993 aaKnown RBP20.34■□□□□ 0.85
CLIP3-206ENST00000593074 A0A0A0MRY4 1105 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 IQANK1A0A1B0GTG1 560 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 MOXD2PA6NHM9 499 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 GSTA1P08263 222 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 PRKCHP24723 683 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 GBP2P32456 591 aaPredicted RBP20.34■□□□□ 0.85
CLIP3-206ENST00000593074 SCAPQ12770 1279 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 NME3Q13232 169 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 BANPQ8N9N5 519 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 PXYLP1Q8TE99 480 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 PGAP3Q96FM1 320 aaPredicted RBP20.34■□□□□ 0.85
CLIP3-206ENST00000593074 SPATA13Q96N96 652 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 KCNK16Q96T55 309 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 RTP3Q9BQQ7 232 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 WDR6Q9NNW5 1121 aaKnown RBP20.34■□□□□ 0.85
CLIP3-206ENST00000593074 SLC12A4Q9UP95 1085 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 ARL2BPQ9Y2Y0 163 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 IKBKGQ9Y6K9 419 aa20.34■□□□□ 0.85
CLIP3-206ENST00000593074 TRDMT1O14717 391 aaKnown RBP20.33■□□□□ 0.85
CLIP3-206ENST00000593074 TM9SF1O15321 606 aa20.33■□□□□ 0.85
CLIP3-206ENST00000593074 B3GAT3O94766 335 aa20.33■□□□□ 0.85
CLIP3-206ENST00000593074 INHBAP08476 426 aa20.33■□□□□ 0.85
CLIP3-206ENST00000593074 ODC1P11926 461 aa20.33■□□□□ 0.85
CLIP3-206ENST00000593074 GRIK3Q13003 919 aa20.33■□□□□ 0.85
CLIP3-206ENST00000593074 PAFAH1B3Q15102 231 aaKnown RBP20.33■□□□□ 0.85
CLIP3-206ENST00000593074 METTL23Q86XA0 190 aa20.33■□□□□ 0.85
CLIP3-206ENST00000593074 LGMNQ99538 433 aa20.33■□□□□ 0.85
CLIP3-206ENST00000593074 CSNK1G1Q9HCP0 422 aa20.33■□□□□ 0.85
CLIP3-206ENST00000593074 XAB2Q9HCS7 855 aaKnown RBP20.33■□□□□ 0.85
CLIP3-206ENST00000593074 ABCF3Q9NUQ8 709 aa20.33■□□□□ 0.85
CLIP3-206ENST00000593074 INPP5FQ9Y2H2 1132 aa20.33■□□□□ 0.85
CLIP3-206ENST00000593074 SYNJ2BP-COX16A0A087WUM0 186 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 H0YHG0 523 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 CYP11A1P05108 521 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 GLUD2P49448 558 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 ANKRD20A2Q5SQ80 823 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 ANKRD20A1Q5TYW2 823 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 ANKRD20A3Q5VUR7 823 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 BHLHA9Q7RTU4 235 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 PRPF39Q86UA1 669 aaKnown RBP20.33■□□□□ 0.84
CLIP3-206ENST00000593074 ECHDC2Q86YB7 292 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 SLC7A14Q8TBB6 771 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 SIGLEC10Q96LC7 697 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 TSEN34Q9BSV6 310 aaKnown RBP20.33■□□□□ 0.84
CLIP3-206ENST00000593074 PITPNM3Q9BZ71 974 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 COX16Q9P0S2 106 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 STARD13Q9Y3M8 1113 aa20.33■□□□□ 0.84
CLIP3-206ENST00000593074 CAPN9O14815 690 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 DCLK1O15075 740 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 PAX3P23760 479 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 ADRA1BP35368 520 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 FDFT1P37268 417 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 RABGGTBP53611 331 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 CDK16Q00536 496 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 SEMA3BQ13214 749 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 TUSC3Q13454 348 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 HHATQ5VTY9 493 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 LVRNQ6Q4G3 990 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 RFX8Q6ZV50 586 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 SLC26A11Q86WA9 606 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 CREBZFQ9NS37 354 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 RRN3Q9NYV6 651 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 ZNF180Q9UJW8 692 aa20.32■□□□□ 0.84
CLIP3-206ENST00000593074 EEF2KO00418 725 aaKnown RBP20.31■□□□□ 0.84
CLIP3-206ENST00000593074 OPHN1O60890 802 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 FAM155BO75949 473 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 APOEP02649 317 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 LTFP02788 710 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 CKBP12277 381 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms