RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 LPCAT2Q7L5N7 544 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 CCDC117Q8IWD4 279 aaPredicted RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 ENOX1Q8TC92 643 aaKnown RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 DQX1Q8TE96 717 aaKnown RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 IPO4Q8TEX9 1081 aaKnown RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 GABRG3Q99928 467 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 RTKNQ9BST9 563 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 CIPCQ9C0C6 399 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 SYNCQ9H7C4 482 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 POPDC2Q9HBU9 364 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 ACP6Q9NPH0 428 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 ANO10Q9NW15 660 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 ELOVL2Q9NXB9 296 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 CACNA2D2Q9NY47 1150 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 DLL3Q9NYJ7 618 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 PCDHGC3Q9UN70 934 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 TLR6Q9Y2C9 796 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 FOXN3O00409 490 aaPredicted RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 PAPSS1O43252 624 aaPredicted RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 ACSL4O60488 711 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 SYNCRIPO60506 623 aaKnown RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 ZNF217O75362 1048 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 CAVIN2O95810 425 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 MBD3O95983 291 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 IGLV3-27P01718 113 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 APOEP02649 317 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 DHPSP49366 369 aaPredicted RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 YWHAZP63104 245 aaKnown RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 GEN1Q17RS7 908 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 EFHC1Q5JVL4 640 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 MIIPQ5JXC2 388 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 PMS2CLQ68D20 193 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 SLC36A4Q6YBV0 504 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 CYP2U1Q7Z449 544 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 ANKRD20A12PQ8NF67 263 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 GPT2Q8TD30 523 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 WFIKKN2Q8TEU8 576 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 PIWIL1Q96J94 861 aaKnown RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 PPP1R13BQ96KQ4 1090 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 ACOX2Q99424 681 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 LHX5Q9H2C1 402 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 SIX2Q9NPC8 291 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 THAP10Q9P2Z0 257 aaPredicted RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 SLC12A6Q9UHW9 1150 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 HCN2Q9UL51 889 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 NAALADL1Q9UQQ1 740 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 DMXL1Q9Y485 3027 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 A0A1W2PQF6 199 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 BCLAF3A2AJT9 711 aaKnown RBP12.87□□□□□ -0.35
SS18-225ENST00000585121 TBL1XO60907 577 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 GLI1P08151 1106 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 GABRG2P18507 467 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 HOXD9P28356 352 aaPredicted RBP12.87□□□□□ -0.35
SS18-225ENST00000585121 CDK17Q00537 523 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 DRAP1Q14919 205 aaPredicted RBP12.87□□□□□ -0.35
SS18-225ENST00000585121 CCDC6Q16204 474 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 SPDYCQ5MJ68 293 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 FKBP15Q5T1M5 1219 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 MPP7Q5T2T1 576 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 KLHDC7AQ5VTJ3 777 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 PASD1Q8IV76 773 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 FAM71AQ8IYT1 594 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 RLN3Q8WXF3 142 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 LSM14BQ9BX40 385 aaKnown RBP12.87□□□□□ -0.35
SS18-225ENST00000585121 CYTH4Q9UIA0 394 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 PLA2G4CQ9UP65 541 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 STON1Q9Y6Q2 735 aa12.87□□□□□ -0.35
SS18-225ENST00000585121 SPAG17Q6Q759 2223 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 AP5Z1O43299 807 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 MOCS2O96007 188 aaPredicted RBP12.86□□□□□ -0.35
SS18-225ENST00000585121 FYNP06241 537 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 BCKDHBP21953 392 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 CLCN1P35523 988 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 DPP6P42658 865 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 ATXN1P54253 815 aaKnown RBP12.86□□□□□ -0.35
SS18-225ENST00000585121 SF3A2Q15428 464 aaKnown RBP12.86□□□□□ -0.35
SS18-225ENST00000585121 STX1AQ16623 288 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 DCAF6Q58WW2 860 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 PLA2G2CQ5R387 149 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 PIK3R6Q5UE93 754 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 OR6B2Q6IFH4 312 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 RFWD3Q6PCD5 774 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 KIAA1324Q6UXG2 1013 aaKnown RBP12.86□□□□□ -0.35
SS18-225ENST00000585121 RBM43Q6ZSC3 357 aaKnown RBP12.86□□□□□ -0.35
SS18-225ENST00000585121 C11orf57Q6ZUT1 292 aaPredicted RBP12.86□□□□□ -0.35
SS18-225ENST00000585121 TAC4Q86UU9 113 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 SLC47A2Q86VL8 602 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 HJURPQ8NCD3 748 aaPredicted RBP12.86□□□□□ -0.35
SS18-225ENST00000585121 ADAM32Q8TC27 787 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 RNF34Q969K3 372 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 P2RY11Q96G91 374 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 VPS16Q9H269 839 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 ASNSD1Q9NWL6 643 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 TAB2Q9NYJ8 693 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 CALCOCO1Q9P1Z2 691 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 CLEC4EQ9ULY5 219 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 RAD54BQ9Y620 910 aa12.86□□□□□ -0.35
SS18-225ENST00000585121 MYO18AQ92614 2054 aaKnown RBP12.86□□□□□ -0.35
SS18-225ENST00000585121 GOLGA6L7A0A1B0GV03 622 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms