RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ZNF185O15231 689 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 RNF40O75150 1001 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 ERLIN1O75477 346 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 FGF19O95750 216 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 EGFP01133 1207 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 SETSIPP0DME0 302 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 GBP1P32455 592 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 CDH5P33151 784 aaPredicted RBP10.62□□□□□ -0.71
SS18-207ENST00000577636 GNL1P36915 607 aaPredicted RBP10.62□□□□□ -0.71
SS18-207ENST00000577636 RUNX3Q13761 415 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 VEPH1Q14D04 833 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 SLC39A12Q504Y0 691 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 ODF2Q5BJF6 829 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 SEL1L2Q5TEA6 688 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 FSTL4Q6MZW2 842 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 ZNF572Q7Z3I7 529 aaPredicted RBP10.62□□□□□ -0.71
SS18-207ENST00000577636 TOP6BLQ8N6T0 577 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 COG1Q8WTW3 980 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 TFAP2BQ92481 460 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 C18orf8Q96DM3 657 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 EDEM2Q9BV94 578 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 SLC46A2Q9BY10 475 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 OXCT2Q9BYC2 517 aaPredicted RBP10.62□□□□□ -0.71
SS18-207ENST00000577636 ELOVL4Q9GZR5 314 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 CARD9Q9H257 536 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 OBP2AQ9NY56 170 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 IP6K2Q9UHH9 426 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 PACSIN2Q9UNF0 486 aaPredicted RBP10.62□□□□□ -0.71
SS18-207ENST00000577636 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.62□□□□□ -0.71
SS18-207ENST00000577636 PCDHGA5Q9Y5G8 931 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 PPEF2O14830 753 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 RHOBTB1O94844 696 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 TOP3BO95985 862 aaKnown RBP10.61□□□□□ -0.71
SS18-207ENST00000577636 HOXB3P14651 431 aaPredicted RBP10.61□□□□□ -0.71
SS18-207ENST00000577636 ARSAP15289 507 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 COMTP21964 271 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 CDC25CP30307 473 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 SSR1P43307 286 aaKnown RBP10.61□□□□□ -0.71
SS18-207ENST00000577636 GALK1P51570 392 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 DGKEP52429 567 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 RWDD2BP57060 319 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 LILRA4P59901 499 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 MAMLD1Q13495 774 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 PPP2R5EQ16537 467 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 PLK5Q496M5 336 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 GLE1Q53GS7 698 aaKnown RBP10.61□□□□□ -0.71
SS18-207ENST00000577636 TMEM196Q5HYL7 178 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 PLA2G2CQ5R387 149 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 DAB2IPQ5VWQ8 1189 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 SCARA3Q6AZY7 606 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 PLEKHA7Q6IQ23 1121 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 CC2D1AQ6P1N0 951 aaPredicted RBP10.61□□□□□ -0.71
SS18-207ENST00000577636 DENND1BQ6P3S1 775 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 LCLAT1Q6UWP7 414 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 UNQ6494/PRO21346Q6UXR6 183 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 METTL23Q86XA0 190 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 ADGRF2Q8IZF7 708 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 TMEM86AQ8N2M4 240 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 MAB21L3Q8N8X9 362 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 C3orf20Q8ND61 904 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 SPATA4Q8NEY3 305 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 ACTRT1Q8TDG2 376 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 WHAMMQ8TF30 809 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 CHFRQ96EP1 664 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 SENP8Q96LD8 212 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 ZSWIM1Q9BR11 485 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 MRPL45Q9BRJ2 306 aaKnown RBP10.61□□□□□ -0.71
SS18-207ENST00000577636 DUSP15Q9H1R2 295 aaPredicted RBP10.61□□□□□ -0.71
SS18-207ENST00000577636 GOLPH3Q9H4A6 298 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 FBRSL1Q9HCM7 1045 aaKnown RBP10.61□□□□□ -0.71
SS18-207ENST00000577636 ABCB6Q9NP58 842 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 MAGED2Q9UNF1 606 aaPredicted RBP10.61□□□□□ -0.71
SS18-207ENST00000577636 COL4A2P08572 1712 aa10.61□□□□□ -0.71
SS18-207ENST00000577636 CCDC163A0A0D9SF12 145 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 TARSL2A2RTX5 802 aaKnown RBP10.6□□□□□ -0.71
SS18-207ENST00000577636 OTOL1A6NHN0 477 aaPredicted RBP10.6□□□□□ -0.71
SS18-207ENST00000577636 CCDC188H7C350 402 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 O00370 1275 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 CYB561D2O14569 222 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 PROSCO94903 275 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 RHOXF2BP0C7M4 288 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 ODC1P11926 461 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 TYMPP19971 482 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 WARSP23381 471 aaKnown RBP10.6□□□□□ -0.71
SS18-207ENST00000577636 CTNNA2P26232 953 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 MAN1A1P33908 653 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 AVPR1AP37288 418 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 LHX1P48742 406 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 TUFMP49411 452 aaKnown RBP10.6□□□□□ -0.71
SS18-207ENST00000577636 PSMC1P62191 440 aaKnown RBP10.6□□□□□ -0.71
SS18-207ENST00000577636 ZNF252P-AS1Q0IIN9 211 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 ORC1Q13415 861 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 PIGHQ14442 188 aaPredicted RBP10.6□□□□□ -0.71
SS18-207ENST00000577636 ZNF268Q14587 947 aaPredicted RBP10.6□□□□□ -0.71
SS18-207ENST00000577636 LONRF2Q1L5Z9 754 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 SOWAHAQ2M3V2 549 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 GOLGA7BQ2TAP0 167 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 UAP1L1Q3KQV9 507 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 SH3PXD2AQ5TCZ1 1133 aa10.6□□□□□ -0.71
SS18-207ENST00000577636 NAIF1Q69YI7 327 aaPredicted RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms