RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SRGAP3O43295 1099 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 IL18BPO95998 194 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 CPA1P15085 419 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 RAC2P15153 192 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 TPH1P17752 444 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 TGM1P22735 817 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 ARL3P36405 182 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 CPT1AP50416 773 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 EPHB4P54760 987 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 LRMPQ12912 555 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 PDCLQ13371 301 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 ACVR2BQ13705 512 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 CR1LQ2VPA4 569 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 PABPC1LQ4VXU2 614 aaKnown RBP6.28□□□□□ -1.4
VPS53-219ENST00000576019 PRAMEF14Q5SWL7 426 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 TTC22Q5TAA0 569 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 MRNIPQ6NTE8 343 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 RINT1Q6NUQ1 792 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 OTOP2Q7RTS6 562 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 SZRD1Q7Z422 152 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 RASGRP3Q8IV61 690 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 DIS3L2Q8IYB7 885 aaKnown RBP6.28□□□□□ -1.4
VPS53-219ENST00000576019 SRBD1Q8N5C6 995 aaKnown RBP6.28□□□□□ -1.4
VPS53-219ENST00000576019 CASKIN2Q8WXE0 1202 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 ASB11Q8WXH4 323 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 OPTNQ96CV9 577 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 MYOCQ99972 504 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 METTL22Q9BUU2 404 aaPredicted RBP6.28□□□□□ -1.4
VPS53-219ENST00000576019 VPS16Q9H269 839 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 DBNDD1Q9H9R9 158 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 TNFRSF12AQ9NP84 129 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 CFAP97Q9P2B7 532 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 ARHGAP20Q9P2F6 1191 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 TMEM59LQ9UK28 342 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 C19orf53Q9UNZ5 99 aaPredicted RBP6.28□□□□□ -1.4
VPS53-219ENST00000576019 PLEKHM1Q9Y4G2 1056 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 MTCH2Q9Y6C9 303 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 COL4A4P53420 1690 aaPredicted RBP6.28□□□□□ -1.4
VPS53-219ENST00000576019 ABCA12Q86UK0 2595 aa6.28□□□□□ -1.4
VPS53-219ENST00000576019 NBEAQ8NFP9 2946 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 CNOT1A5YKK6 2376 aaKnown RBP6.27□□□□□ -1.41
VPS53-219ENST00000576019 M0QYG6 137 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 KIAA0391O15091 583 aaKnown RBP6.27□□□□□ -1.41
VPS53-219ENST00000576019 PSPNO60542 156 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 ALDH1A2O94788 518 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 CYBBP04839 570 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 ANXA6P08133 673 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 RAP2AP10114 183 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 IL11P20809 199 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 ACSL1P33121 698 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 CRHR1P34998 444 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 PGM1P36871 562 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 CD96P40200 585 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 RGS2P41220 211 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 TNNT3P45378 269 aaPredicted RBP6.27□□□□□ -1.41
VPS53-219ENST00000576019 RBM5P52756 815 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS53-219ENST00000576019 CHRNEQ04844 493 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 CHAF1BQ13112 559 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 TDGQ13569 410 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 ARHGEF7Q14155 803 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 GRM4Q14833 912 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 ASIC2Q16515 512 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 BAK1Q16611 211 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 CRB2Q5IJ48 1285 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 FAM69AQ5T7M9 428 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 FCRL6Q6DN72 434 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 MFSD5Q6N075 450 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 ATF7IPQ6VMQ6 1270 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 KRT74Q7RTS7 529 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 KRT73Q86Y46 540 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 MIB1Q86YT6 1006 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 DTX3Q8N9I9 347 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 MDM1Q8TC05 714 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 AFAP1L1Q8TED9 768 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 CUL5Q93034 780 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 CALML4Q96GE6 196 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 RBM17Q96I25 401 aaKnown RBP6.27□□□□□ -1.41
VPS53-219ENST00000576019 JAKMIP1Q96N16 626 aaKnown RBP6.27□□□□□ -1.41
VPS53-219ENST00000576019 MED15Q96RN5 788 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 PPP1R9BQ96SB3 815 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 SLC25A18Q9H1K4 315 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 PDCL3Q9H2J4 239 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 SYNCQ9H7C4 482 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 GRPEL1Q9HAV7 217 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 BRF2Q9HAW0 419 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 HSPBP1Q9NZL4 362 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 TMOD4Q9NZQ9 345 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 ZFP69BQ9UJL9 534 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 ZNF215Q9UL58 517 aaPredicted RBP6.27□□□□□ -1.41
VPS53-219ENST00000576019 CA14Q9ULX7 337 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 SLC45A2Q9UMX9 530 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 NAALADL1Q9UQQ1 740 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 FLT4P35916 1363 aa6.27□□□□□ -1.41
VPS53-219ENST00000576019 HECTD1Q9ULT8 2610 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 LOC102723971A0A1B0GUV8 181 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 FAM90A18PA6NE21 464 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 FAM90A16PA6NEW6 464 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 FAM90A9PA6NNJ1 464 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 FAM90A5PA8MXJ8 464 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 BTBD19C9JJ37 291 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms