RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 TAB2Q9NYJ8 693 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 INVSQ9Y283 1065 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 FHOD1Q9Y613 1164 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 DCHS1Q96JQ0 3298 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 CAPN9O14815 690 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 NPC1O15118 1278 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 IRAK2O43187 625 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 ACSL4O60488 711 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 FOXD2O60548 495 aaPredicted RBP21.11■□□□□ 0.97
CLK3-225ENST00000569063 TSPAN3O60637 253 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 GLI1P08151 1106 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 WASP42768 502 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 RAPGEF1Q13905 1077 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 KRT31Q15323 416 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 STX1AQ16623 288 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 FAM133BQ5BKY9 247 aaKnown RBP21.11■□□□□ 0.97
CLK3-225ENST00000569063 MPP7Q5T2T1 576 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 CCDC183Q5T5S1 534 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 PIK3R6Q5UE93 754 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 C11orf57Q6ZUT1 292 aaPredicted RBP21.11■□□□□ 0.97
CLK3-225ENST00000569063 PASD1Q8IV76 773 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 HMGB4Q8WW32 186 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 NOX5Q96PH1 765 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 ARRDC1-AS1Q9H2J1 176 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 PLCB1Q9NQ66 1216 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 DLL3Q9NYJ7 618 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 BCCIPQ9P287 314 aaKnown RBP eCLIP21.11■□□□□ 0.97
CLK3-225ENST00000569063 TJP2Q9UDY2 1190 aa21.11■□□□□ 0.97
CLK3-225ENST00000569063 TIMM44O43615 452 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 IGLV3-25P01717 112 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 GABRG2P18507 467 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 SDHBP21912 280 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 SLC6A4P31645 630 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 GBP1P32455 592 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 P2RY2P41231 377 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 SNX16P57768 344 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 ENPP2Q13822 863 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 BYSLQ13895 437 aaKnown RBP21.1■□□□□ 0.97
CLK3-225ENST00000569063 EIF4HQ15056 248 aaKnown RBP21.1■□□□□ 0.97
CLK3-225ENST00000569063 E2F5Q15329 346 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 PLA2G2CQ5R387 149 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 PMS2CLQ68D20 193 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 RNF43Q68DV7 783 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 PRR23CQ6ZRP0 262 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 TAC4Q86UU9 113 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 ADAM32Q8TC27 787 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 IPO4Q8TEX9 1081 aaKnown RBP21.1■□□□□ 0.97
CLK3-225ENST00000569063 UCMAQ8WVF2 138 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 LSM14BQ9BX40 385 aaKnown RBP21.1■□□□□ 0.97
CLK3-225ENST00000569063 STK33Q9BYT3 514 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 VPS16Q9H269 839 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 ASNSD1Q9NWL6 643 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 ELOVL2Q9NXB9 296 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 CACNA2D2Q9NY47 1150 aa21.1■□□□□ 0.97
CLK3-225ENST00000569063 THAP10Q9P2Z0 257 aaPredicted RBP21.1■□□□□ 0.97
CLK3-225ENST00000569063 GOLGA6L7A0A1B0GV03 622 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 TPM2P07951 284 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 ZNF806P0C7X5 589 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 CYP11B1P15538 503 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 BCKDHBP21953 392 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 SGSHP51688 502 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 EIF4EBP2Q13542 120 aaPredicted RBP21.09■□□□□ 0.97
CLK3-225ENST00000569063 PUM1Q14671 1186 aaKnown RBP eCLIP21.09■□□□□ 0.97
CLK3-225ENST00000569063 TAF5Q15542 800 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 RSPO4Q2I0M5 234 aaPredicted RBP21.09■□□□□ 0.97
CLK3-225ENST00000569063 MAP7D1Q3KQU3 841 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 EFHC1Q5JVL4 640 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 TMEM215Q68D42 235 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 NADSYN1Q6IA69 706 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 KIAA1211LQ6NV74 962 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 RFWD3Q6PCD5 774 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 KIAA0907Q7Z7F0 614 aaPredicted RBP21.09■□□□□ 0.97
CLK3-225ENST00000569063 PGBD3Q8N328 593 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 C1orf131Q8NDD1 294 aaKnown RBP21.09■□□□□ 0.97
CLK3-225ENST00000569063 RLN3Q8WXF3 142 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 SPACA7Q96KW9 195 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 SLC2A13Q96QE2 648 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 DDX50Q9BQ39 737 aaKnown RBP21.09■□□□□ 0.97
CLK3-225ENST00000569063 CEP83Q9Y592 693 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.09■□□□□ 0.97
CLK3-225ENST00000569063 STON1Q9Y6Q2 735 aa21.09■□□□□ 0.97
CLK3-225ENST00000569063 MYO18AQ92614 2054 aaKnown RBP21.09■□□□□ 0.97
CLK3-225ENST00000569063 WASH3PC4AMC7 463 aa21.08■□□□□ 0.97
CLK3-225ENST00000569063 TRUB2O95900 331 aaKnown RBP21.08■□□□□ 0.97
CLK3-225ENST00000569063 HLA-FP30511 346 aa21.08■□□□□ 0.97
CLK3-225ENST00000569063 CDH5P33151 784 aaPredicted RBP21.08■□□□□ 0.97
CLK3-225ENST00000569063 MYL5Q02045 173 aa21.08■□□□□ 0.97
CLK3-225ENST00000569063 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.08■□□□□ 0.97
CLK3-225ENST00000569063 F8VZ95 297 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 ZBTB24O43167 697 aaPredicted RBP21.07■□□□□ 0.96
CLK3-225ENST00000569063 HSF2BPO75031 334 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 ERBB2P04626 1255 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 MPLP40238 635 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 PTPN20Q4JDL3 420 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 DCAF6Q58WW2 860 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 FKBP15Q5T1M5 1219 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 OLFML1Q6UWY5 402 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 FAM183BPQ6ZVS7 135 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 ZDHHC17Q8IUH5 632 aa21.07■□□□□ 0.96
CLK3-225ENST00000569063 TMEM35BQ8NCS4 154 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms