RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 BPIFA3Q9BQP9 254 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 POPDC2Q9HBU9 364 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 PARD6AQ9NPB6 346 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 NLRC4Q9NPP4 1024 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 MMP17Q9ULZ9 603 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 USP18Q9UMW8 372 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 SMG5Q9UPR3 1016 aaKnown RBP15.66■□□□□ 0.1
VPS39-210ENST00000568357 STARD13Q9Y3M8 1113 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 MYOFQ9NZM1 2061 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 GOLGA6L7A0A1B0GV03 622 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 CAPN9O14815 690 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 CNR2P34972 360 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 JAM2P57087 298 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 PITX1P78337 314 aaPredicted RBP15.65■□□□□ 0.1
VPS39-210ENST00000568357 RING1Q06587 406 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 CRY1Q16526 586 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 PTPN20Q4JDL3 420 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 ADGRF1Q5T601 910 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 FAM183BPQ6ZVS7 135 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 KCNV2Q8TDN2 545 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 DDI1Q8WTU0 396 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 SLC39A13Q96H72 371 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 FCRL2Q96LA5 508 aaPredicted RBP15.65■□□□□ 0.1
VPS39-210ENST00000568357 NOX5Q96PH1 765 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 EBF1Q9UH73 591 aa15.65■□□□□ 0.1
VPS39-210ENST00000568357 CCDC163A0A0D9SF12 145 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 FAM170AA1A519 330 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 GRAP2O75791 330 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 GFPT2O94808 682 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 APBB3O95704 486 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 LATS1O95835 1130 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 CYBBP04839 570 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 SLC6A4P31645 630 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 CDH5P33151 784 aaPredicted RBP15.64■□□□□ 0.09
VPS39-210ENST00000568357 ZNF165P49910 485 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 SIM2Q14190 667 aaPredicted RBP15.64■□□□□ 0.09
VPS39-210ENST00000568357 LPAL2Q16609 132 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 HSF5Q4G112 596 aaPredicted RBP15.64■□□□□ 0.09
VPS39-210ENST00000568357 MPPE1Q53F39 396 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 PPM1JQ5JR12 505 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 NUGGCQ68CJ6 796 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 NADSYN1Q6IA69 706 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 OR6B2Q6IFH4 312 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 OLFML1Q6UWY5 402 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 NUDT18Q6ZVK8 323 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 TAC4Q86UU9 113 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 UNC45BQ8IWX7 931 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 DEFB106AQ8N104 65 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 ZNF513Q8N8E2 541 aaPredicted RBP15.64■□□□□ 0.09
VPS39-210ENST00000568357 TMEM35BQ8NCS4 154 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 TSTD1Q8NFU3 115 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 AZIN2Q96A70 460 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 TMA16Q96EY4 203 aaKnown RBP15.64■□□□□ 0.09
VPS39-210ENST00000568357 PCMTD1Q96MG8 357 aaPredicted RBP15.64■□□□□ 0.09
VPS39-210ENST00000568357 ERGIC2Q96RQ1 377 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 ACOX2Q99424 681 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 PDCL3Q9H2J4 239 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 TLR6Q9Y2C9 796 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 SLC27A6Q9Y2P4 619 aa15.64■□□□□ 0.09
VPS39-210ENST00000568357 ATG2BQ96BY7 2078 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 SYCE3A1L190 88 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 AXIN1O15169 862 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 TEX33O43247 280 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 ACSL4O60488 711 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 TRUB2O95900 331 aaKnown RBP15.63■□□□□ 0.09
VPS39-210ENST00000568357 IGLV3-25P01717 112 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 GLI1P08151 1106 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 MMEP08473 750 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 CHRNB2P17787 502 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 HOXD9P28356 352 aaPredicted RBP15.63■□□□□ 0.09
VPS39-210ENST00000568357 SOX5P35711 763 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 SGSHP51688 502 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 DGKEP52429 567 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 SLC6A3Q01959 620 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 EIF4EBP2Q13542 120 aaPredicted RBP15.63■□□□□ 0.09
VPS39-210ENST00000568357 IQCB1Q15051 598 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 GEN1Q17RS7 908 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 DCAF6Q58WW2 860 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 FAM133BQ5BKY9 247 aaKnown RBP15.63■□□□□ 0.09
VPS39-210ENST00000568357 ZC3H12AQ5D1E8 599 aaKnown RBP15.63■□□□□ 0.09
VPS39-210ENST00000568357 EFHC1Q5JVL4 640 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 EOGTQ5NDL2 527 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 EGFLAMQ63HQ2 1017 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 RFWD3Q6PCD5 774 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 PRR23BQ6ZRT6 265 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 EPS8L1Q8TE68 723 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 SLC20A1Q8WUM9 679 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 SERPINB11Q96P15 392 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 SLC2A13Q96QE2 648 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 TRIM62Q9BVG3 475 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 ASNSD1Q9NWL6 643 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 XPO7Q9UIA9 1087 aaKnown RBP15.63■□□□□ 0.09
VPS39-210ENST00000568357 NOCTQ9UK39 431 aaKnown RBP15.63■□□□□ 0.09
VPS39-210ENST00000568357 CEP83Q9Y592 693 aa15.63■□□□□ 0.09
VPS39-210ENST00000568357 SMTNL1A8MU46 457 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 HSF2BPO75031 334 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 HOXB3P14651 431 aaPredicted RBP15.62■□□□□ 0.09
VPS39-210ENST00000568357 WASP42768 502 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 GABRB2P47870 512 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 SLC11A2P49281 568 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms