RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 E2F5Q15329 346 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 MEA1Q16626 185 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 VWA3BQ502W6 1294 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 NUGGCQ68CJ6 796 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 IL31Q6EBC2 164 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 CYP2U1Q7Z449 544 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 PIGKQ92643 395 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 TUBGCP2Q9BSJ2 902 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 SLC4A5Q9BY07 1137 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 NDST4Q9H3R1 872 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 CALCOCO1Q9P1Z2 691 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 THAP10Q9P2Z0 257 aaPredicted RBP21.59■■□□□ 1.05
CLN3-219ENST00000565778 MBD1Q9UIS9 605 aaPredicted RBP21.59■■□□□ 1.05
CLN3-219ENST00000565778 DNAJC12Q9UKB3 198 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 NAALADL1Q9UQQ1 740 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 GOLGA6L7A0A1B0GV03 622 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 PES1O00541 588 aaKnown RBP21.58■■□□□ 1.05
CLN3-219ENST00000565778 FYNP06241 537 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 HOXD9P28356 352 aaPredicted RBP21.58■■□□□ 1.05
CLN3-219ENST00000565778 PTK2Q05397 1052 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 RING1Q06587 406 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 STARD3Q14849 445 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 TCEAL6Q6IPX3 200 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 RFWD3Q6PCD5 774 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 ARMCX6Q7L4S7 300 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 TMEM110Q86TL2 294 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 SHC3Q92529 594 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 TCEAL3Q969E4 200 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 CYTH4Q9UIA0 394 aa21.58■■□□□ 1.05
CLN3-219ENST00000565778 MYO18AQ92614 2054 aaKnown RBP21.58■■□□□ 1.05
CLN3-219ENST00000565778 CEP250Q9BV73 2442 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 E5RJQ4 531 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 KHNYNO15037 678 aaKnown RBP21.57■■□□□ 1.04
CLN3-219ENST00000565778 ACSL4O60488 711 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 ZNF217O75362 1048 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 IGLV3-27P01718 113 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 NDUFV2P19404 249 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 STPG1Q5TH74 334 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 SLC36A4Q6YBV0 504 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 DEFB119Q8N690 84 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 ADAM32Q8TC27 787 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 DQX1Q8TE96 717 aaKnown RBP21.57■■□□□ 1.04
CLN3-219ENST00000565778 SORCS1Q8WY21 1168 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 SERPINB11Q96P15 392 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 TRIM62Q9BVG3 475 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 CD248Q9HCU0 757 aa21.57■■□□□ 1.04
CLN3-219ENST00000565778 ABCA7Q8IZY2 2146 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 SPAG17Q6Q759 2223 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 FOXN3O00409 490 aaPredicted RBP21.56■■□□□ 1.04
CLN3-219ENST00000565778 PAPSS1O43252 624 aaPredicted RBP21.56■■□□□ 1.04
CLN3-219ENST00000565778 AP5Z1O43299 807 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 SYNCRIPO60506 623 aaKnown RBP21.56■■□□□ 1.04
CLN3-219ENST00000565778 TBL1XO60907 577 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 KRT9P35527 623 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 IL12RB1P42701 662 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 PTGER3P43115 390 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 LIMK1P53667 647 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 YWHAZP63104 245 aaKnown RBP21.56■■□□□ 1.04
CLN3-219ENST00000565778 RPL6Q02878 288 aaKnown RBP21.56■■□□□ 1.04
CLN3-219ENST00000565778 ZNF234Q14588 700 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 EIF4HQ15056 248 aaKnown RBP21.56■■□□□ 1.04
CLN3-219ENST00000565778 CT47A1Q5JQC4 288 aaPredicted RBP21.56■■□□□ 1.04
CLN3-219ENST00000565778 SPDYCQ5MJ68 293 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 PIK3R6Q5UE93 754 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 SYPL2Q5VXT5 272 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 KIAA1324Q6UXG2 1013 aaKnown RBP21.56■■□□□ 1.04
CLN3-219ENST00000565778 AZIN2Q96A70 460 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 MRGPRX1Q96LB2 322 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 DDX50Q9BQ39 737 aaKnown RBP21.56■■□□□ 1.04
CLN3-219ENST00000565778 SLC6A17Q9H1V8 727 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 SIX2Q9NPC8 291 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 SAMSN1Q9NSI8 373 aaKnown RBP21.56■■□□□ 1.04
CLN3-219ENST00000565778 STIM2Q9P246 746 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 TLR6Q9Y2C9 796 aa21.56■■□□□ 1.04
CLN3-219ENST00000565778 KCNJ18B7U540 433 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 IRAK2O43187 625 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 SGSHP51688 502 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 KCNJ12Q14500 433 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 FUT11Q495W5 492 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 MIIPQ5JXC2 388 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 TMEM215Q68D42 235 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 RNF43Q68DV7 783 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 BEND5Q7L4P6 421 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 PASD1Q8IV76 773 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 WDTC1Q8N5D0 677 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 FCRL2Q96LA5 508 aaPredicted RBP21.55■■□□□ 1.04
CLN3-219ENST00000565778 GBP4Q96PP9 640 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 IRX2Q9BZI1 471 aaPredicted RBP21.55■■□□□ 1.04
CLN3-219ENST00000565778 POPDC2Q9HBU9 364 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 ABCB8Q9NUT2 735 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 AJAP1Q9UKB5 411 aaPredicted RBP21.55■■□□□ 1.04
CLN3-219ENST00000565778 CYP8B1Q9UNU6 501 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 PLA2G4CQ9UP65 541 aa21.55■■□□□ 1.04
CLN3-219ENST00000565778 IGHV1OR15-9A0A0B4J2B8 117 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 PATE3B3GLJ2 98 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 HLA-FP30511 346 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 SLC6A4P31645 630 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 PDCLQ13371 301 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 FAM133BQ5BKY9 247 aaKnown RBP21.54■■□□□ 1.04
CLN3-219ENST00000565778 MPP7Q5T2T1 576 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms