RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.68□□□□□ -1.34
SPG11-221ENST00000560299 DONSONQ9NYP3 566 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 COX16Q9P0S2 106 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 STIM2Q9P246 746 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 RCOR3Q9P2K3 495 aaPredicted RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 FEZ2Q9UHY8 353 aaPredicted RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 ZMYM5Q9UJ78 669 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 DNMT3LQ9UJW3 386 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 FZD10Q9ULW2 581 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 AP4E1Q9UPM8 1137 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 TLR6Q9Y2C9 796 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 HCFC2Q9Y5Z7 792 aa6.68□□□□□ -1.34
SPG11-221ENST00000560299 ZFP37Q9Y6Q3 630 aaPredicted RBP6.68□□□□□ -1.34
SPG11-221ENST00000560299 MUC3AQ02505 3323 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 PLXNA3P51805 1871 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 ZNF840PA6NDX5 716 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 GRXCR2A6NFK2 248 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 H3BRJ5 948 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 RFXAPO00287 272 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 ZNF197O14709 1029 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 IRAK2O43187 625 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 DAPK3O43293 454 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 HMGA1P17096 107 aaKnown RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 DDX6P26196 483 aaKnown RBP eCLIP6.67□□□□□ -1.34
SPG11-221ENST00000560299 IL1R2P27930 398 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 HTR7P34969 479 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 PTPN7P35236 360 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 IRS1P35568 1242 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 MARCKSL1P49006 195 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 HARS2P49590 506 aaKnown RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 TERF1P54274 439 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 TBX4P57082 545 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 LMNB2Q03252 620 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 RING1Q06587 406 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 SCAPQ12770 1279 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 EFEMP1Q12805 493 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 ZNF211Q13398 564 aaPredicted RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 PPP2R5DQ14738 602 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 CBX2Q14781 532 aaPredicted RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 TRIP4Q15650 581 aaPredicted RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 DPYSL2Q16555 572 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 ATP13A4Q4VNC1 1196 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 GLE1Q53GS7 698 aaKnown RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 ARHGAP15Q53QZ3 475 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 PPP6R3Q5H9R7 873 aaPredicted RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 KCNT1Q5JUK3 1230 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 DAB2IPQ5VWQ8 1189 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 NUGGCQ68CJ6 796 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 ANKRD54Q6NXT1 300 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 ADGRD1Q6QNK2 874 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 SPOCD1Q6ZMY3 1216 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 PDZD4Q76G19 769 aaPredicted RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 BZW1Q7L1Q6 419 aaKnown RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 ZNF572Q7Z3I7 529 aaPredicted RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 BNIPLQ7Z465 357 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 MAATS1Q7Z4T9 603 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 TAC4Q86UU9 113 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 ARFGAP1Q8N6T3 406 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 SPATA4Q8NEY3 305 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 CCDC26Q8TAB7 109 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 ADAM32Q8TC27 787 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 SPOCK2Q92563 424 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 MS4A14Q96JA4 679 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 HAPLN3Q96S86 360 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 EPAS1Q99814 870 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 DDX50Q9BQ39 737 aaKnown RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 ZNF670Q9BS34 389 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 SNRNP25Q9BV90 132 aaKnown RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 FRMD8P1Q9BZ68 369 aaPredicted RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 TKTL2Q9H0I9 626 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 S1PR5Q9H228 398 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 ADAM7Q9H2U9 754 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 SFXN1Q9H9B4 322 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 PIDD1Q9HB75 910 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 NMUR1Q9HB89 426 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 WDR6Q9NNW5 1121 aaKnown RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 MAN1C1Q9NR34 630 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 PIGVQ9NUD9 493 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 MARCH2Q9P0N8 246 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 CLEC1BQ9P126 229 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 SFMBT1Q9UHJ3 866 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 RASAL2Q9UJF2 1139 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 HBS1LQ9Y450 684 aaKnown RBP6.67□□□□□ -1.34
SPG11-221ENST00000560299 CLUHO75153 1309 aa6.67□□□□□ -1.34
SPG11-221ENST00000560299 VCANP13611 3396 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 ATG2AQ2TAZ0 1938 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 hCG_1818297A0A087WSY0 165 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 SLC12A8A0AV02 714 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 PI4K2BG5E9Z4 385 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 EEF2KO00418 725 aaKnown RBP6.66□□□□□ -1.34
SPG11-221ENST00000560299 CCL16O15467 120 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 ZNF189O75820 626 aaPredicted RBP6.66□□□□□ -1.34
SPG11-221ENST00000560299 GLP2RO95838 553 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 IGLV3-25P01717 112 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 F11P03951 625 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 TUBBP07437 444 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 MBL2P11226 248 aaPredicted RBP6.66□□□□□ -1.34
SPG11-221ENST00000560299 TCF4P15884 667 aa6.66□□□□□ -1.34
SPG11-221ENST00000560299 TFE3P19532 575 aaPredicted RBP6.66□□□□□ -1.34
SPG11-221ENST00000560299 MCM3P25205 808 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms