RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 ROBO1Q9Y6N7 1651 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 N4BP2Q86UW6 1770 aaPredicted RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 CAPN8A6NHC0 703 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 TBX10O75333 385 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 CXCL8P10145 99 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 TCF4P15884 667 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 FDFT1P37268 417 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PTGER2P43116 358 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 GJA8P48165 433 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PDK2Q15119 407 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 TJAP1Q5JTD0 557 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 RNASEH2BQ5TBB1 312 aaKnown RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 PRAMEF18Q5VWM3 479 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PLEKHA7Q6IQ23 1121 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 ELMSAN1Q6PJG2 1045 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 SETD3Q86TU7 594 aaPredicted RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 C10orf107Q8IVU9 208 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 CCDC117Q8IWD4 279 aaPredicted RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 NETO2Q8NC67 525 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 BEST2Q8NFU1 509 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 IPMKQ8NFU5 416 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PIWIL2Q8TC59 973 aaKnown RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 CALML6Q8TD86 181 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 ZC3H15Q8WU90 426 aaKnown RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 CPT1BQ92523 772 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 ADAM7Q9H2U9 754 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 HUS1O60921 280 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 TPH1P17752 444 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PEX2P28328 305 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 TCF7P36402 384 aaPredicted RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 TNFSF9P41273 254 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PLIN5Q00G26 463 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 MAP3K10Q02779 954 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 TMEM62Q0P6H9 643 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 DGKZQ13574 1117 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 NFIL3Q16649 462 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 LIN52Q52LA3 116 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 BOLA3Q53S33 107 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 VWA5B1Q5TIE3 1220 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PHF13Q86YI8 300 aaPredicted RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 OR5B17Q8NGF7 314 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 GPRASP2Q96D09 838 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 FAM163AQ96GL9 167 aaPredicted RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 DNAJC1Q96KC8 554 aaKnown RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 SYTL2Q9HCH5 934 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 ARHGEF38Q9NXL2 777 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 AP4E1Q9UPM8 1137 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 HBS1LQ9Y450 684 aaKnown RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 TAF4O00268 1085 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 TM7SF2O76062 418 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 SUPT20HL2P0C7V6 817 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 CNTFP26441 200 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 GALK1P51570 392 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 HADHBP55084 474 aaKnown RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 RBP5P82980 135 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 SUPT20HL1Q3ZLR7 823 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 GALNTL6Q49A17 601 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 TLDC1Q6P9B6 456 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 ADGRD1Q6QNK2 874 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 ZBTB49Q6ZSB9 765 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 FAM43BQ6ZT52 329 aaPredicted RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 ZBTB46Q86UZ6 589 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 GALNT15Q8N3T1 639 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PCDH20Q8N6Y1 951 aaKnown RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 KLHL23Q8NBE8 558 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 GLIS1Q8NBF1 620 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 SLC7A14Q8TBB6 771 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 SKA2Q8WVK7 121 aaPredicted RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 FAM151AQ8WW52 585 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 MKL1Q969V6 931 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 RMND5BQ96G75 393 aaPredicted RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 TMEM176AQ96HP8 235 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PAIP1Q9H074 479 aaKnown RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 PIF1Q9H611 641 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 TRPC7Q9HCX4 862 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PCDHA11Q9Y5I1 949 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 AK5Q9Y6K8 562 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 LRP6O75581 1613 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 CNTNAP2Q9UHC6 1331 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 C16orf96A6NNT2 1141 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 CHADO15335 359 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PYGLP06737 847 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 CD48P09326 243 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 CCNFP41002 786 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 CDK7P50613 346 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 ABCE1P61221 599 aaKnown RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 MXD4Q14582 209 aaPredicted RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 PDK1Q15118 436 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 SPDYAQ5MJ70 313 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PTF1AQ7RTS3 328 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 RTKN2Q8IZC4 609 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 TNS4Q8IZW8 715 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 JOSD2Q8TAC2 188 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 PHF12Q96QT6 1004 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 CNPY3Q9BT09 278 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 GPR88Q9GZN0 384 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 NRDE2Q9H7Z3 1164 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 SARS2Q9NP81 518 aaKnown RBP7.3□□□□□ -1.24
USP3-210ENST00000559192 LNPEPQ9UIQ6 1025 aa7.3□□□□□ -1.24
USP3-210ENST00000559192 DCCP43146 1447 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms