RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 PAGE1O75459 146 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 MOCS2O96007 188 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 F9P00740 461 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 MIPP30301 263 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 GDI1P31150 447 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 SLC6A4P31645 630 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 CCR1P32246 355 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 NOP2P46087 812 aaKnown RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 HARS2P49590 506 aaKnown RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 VCPP55072 806 aaKnown RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 HADHBP55084 474 aaKnown RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 MESDQ14696 234 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 PPP2R5DQ14738 602 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 TJAP1Q5JTD0 557 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 ARTNQ5T4W7 220 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 IER5LQ5T953 404 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 TXNRD3NBQ6F5E7 133 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 SCYL2Q6P3W7 929 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 CYP4V2Q6ZWL3 525 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 RNF135Q8IUD6 432 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 ADGRG2Q8IZP9 1017 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 GJD3Q8N144 294 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 NIPA2Q8N8Q9 360 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 OSCP1Q8WVF1 389 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 RNF34Q969K3 372 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 TKTL2Q9H0I9 626 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 HPS4Q9NQG7 708 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 DUS2Q9NX74 493 aaKnown RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 PCSK1NQ9UHG2 260 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 PPP2R2CQ9Y2T4 447 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 HYOU1Q9Y4L1 999 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.31□□□□□ -0.285e-7■■□□□ 13.5
SHMT2-227ENST00000557269 KIF26AQ9ULI4 1882 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 MACROD2A1Z1Q3 448 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 NRDCO43847 1150 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 ACSL4O60488 711 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 PROSCO94903 275 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 CCDC175P0C221 793 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 IL1R2P27930 398 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 ADRA1BP35368 520 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 GGCXP38435 758 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 TAS2R40P59535 323 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 KIF5AQ12840 1032 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 TDGQ13569 410 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 PIGHQ14442 188 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-227ENST00000557269 EML3Q32P44 896 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 FAM133BQ5BKY9 247 aaKnown RBP13.3□□□□□ -0.28
SHMT2-227ENST00000557269 PIK3R6Q5UE93 754 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 NUGGCQ68CJ6 796 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 CC2D1AQ6P1N0 951 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-227ENST00000557269 RFWD3Q6PCD5 774 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 SND1Q7KZF4 910 aaKnown RBP eCLIP13.3□□□□□ -0.28
SHMT2-227ENST00000557269 UNC45BQ8IWX7 931 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 FAM217AQ8IXS0 508 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 YAF2Q8IY57 180 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 TPCN2Q8NHX9 752 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 TTC8Q8TAM2 541 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 DEPDC1BQ8WUY9 529 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 NXPE3Q969Y0 559 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 DCLK3Q9C098 648 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 EBF3Q9H4W6 596 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 THG1LQ9NWX6 298 aaKnown RBP13.3□□□□□ -0.28
SHMT2-227ENST00000557269 STOML2Q9UJZ1 356 aa13.3□□□□□ -0.28
SHMT2-227ENST00000557269 LSM7Q9UK45 103 aaKnown RBP13.3□□□□□ -0.28
SHMT2-227ENST00000557269 GFRA2O00451 464 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 CHADO15335 359 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 TSPAN3O60637 253 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 RNF8O76064 485 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 MOCS3O95396 460 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 APOEP02649 317 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 SLC2A3P11169 496 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 SGSHP51688 502 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 SLC25A11Q02978 314 aaKnown RBP13.29□□□□□ -0.28
SHMT2-227ENST00000557269 CA9Q16790 459 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 ARHGAP29Q52LW3 1261 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 MS4A13Q5J8X5 152 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 BRMS1LQ5PSV4 323 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 ADGRF1Q5T601 910 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 RAP1GAP2Q684P5 730 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 RHBDF2Q6PJF5 856 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 C14orf80Q86SX3 495 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 TMEM25Q86YD3 366 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 PYROXD2Q8N2H3 581 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 KIAA1958Q8N8K9 716 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 AZIN2Q96A70 460 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 BTN2A3PQ96KV6 586 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 PRMT1Q99873 361 aaKnown RBP13.29□□□□□ -0.28
SHMT2-227ENST00000557269 BRD9Q9H8M2 597 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 LZTFL1Q9NQ48 299 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 GPATCH2LQ9NWQ4 482 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 GTSE1Q9NYZ3 720 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 TBC1D14Q9P2M4 693 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 FZD10Q9ULW2 581 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 USP18Q9UMW8 372 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 HS3ST4Q9Y661 456 aa13.29□□□□□ -0.28
SHMT2-227ENST00000557269 MYO10Q9HD67 2058 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 GRID2IPA4D2P6 1211 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 USP27XA6NNY8 438 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 FAM72CH0Y354 149 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms