RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 CAPN9O14815 690 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 SART1O43290 800 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 ATG13O75143 517 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 TRUB2O95900 331 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 MOCS2O96007 188 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 HOXD9P28356 352 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 HOXA6P31267 233 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 CDH5P33151 784 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 TNFRSF4P43489 277 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 NRLP54845 237 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 RNASE9P60153 205 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 NOMO3P69849 1222 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 MRPS21P82921 87 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 FMO1Q01740 532 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 PPP2R5DQ14738 602 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 ZSCAN23Q3MJ62 389 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 ADGRF1Q5T601 910 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 OTUD1Q5VV17 481 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 TRNP1Q6NT89 227 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 ZC3H14Q6PJT7 736 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 CPXM2Q8N436 756 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 TMEM35BQ8NCS4 154 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 SLC30A5Q8TAD4 765 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 WFDC5Q8TCV5 224 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 SORCS1Q8WY21 1168 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 PRICKLE1Q96MT3 831 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 XPO6Q96QU8 1125 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 SPAG5Q96R06 1193 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 FAM126AQ9BYI3 521 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 NUCKS1Q9H1E3 243 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 SYNCQ9H7C4 482 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 STOML2Q9UJZ1 356 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 MMP17Q9ULZ9 603 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 SPTBN4Q9H254 2564 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 CFAP54Q96N23 3096 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 GOLGA8SH3BPF8 625 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 DCLK1O15075 740 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 IRAK2O43187 625 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 ACSL4O60488 711 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 GJB6O95452 261 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 IGLV3-25P01717 112 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 STAT1P42224 750 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 RPS24P62847 133 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 CDR2Q01850 454 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 SLC6A3Q01959 620 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 RING1Q06587 406 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 CRY1Q16526 586 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 EFHC1Q5JVL4 640 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 PIK3R6Q5UE93 754 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 TMEM215Q68D42 235 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 ANO7Q6IWH7 933 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 PRR23BQ6ZRT6 265 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 BEND5Q7L4P6 421 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 SLC26A9Q7LBE3 791 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 WDR5BQ86VZ2 330 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 LONP2Q86WA8 852 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 ERICH1Q86X53 443 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 XYLT1Q86Y38 959 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 CFAP52Q8N1V2 620 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 ZNF513Q8N8E2 541 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 ACDQ96AP0 544 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 TMA16Q96EY4 203 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 SERPINB11Q96P15 392 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 NOX5Q96PH1 765 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 TPSD1Q9BZJ3 242 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 EPC1Q9H2F5 836 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 DDIT4Q9NX09 232 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 STIM2Q9P246 746 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 SMG5Q9UPR3 1016 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 TLR6Q9Y2C9 796 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 CEP83Q9Y592 693 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 GON4LQ3T8J9 2241 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 ABCA7Q8IZY2 2146 aa12.04□□□□□ -0.48
CCDC88C-208ENST00000554165 EML5Q05BV3 1969 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 AXIN1O15169 862 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 TBL1XO60907 577 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 HSF2BPO75031 334 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 APBB3O95704 486 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 CYP1A1P04798 512 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 CYBBP04839 570 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 HLA-FP30511 346 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 GGCXP38435 758 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 GABRB2P47870 512 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 SLC11A2P49281 568 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 NUMBP49757 651 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 DGKEP52429 567 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 CDK17Q00537 523 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 NME3Q13232 169 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 EIF4EBP2Q13542 120 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 MPPE1Q53F39 396 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 RAB6CQ53S08 254 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 E4F1Q66K89 784 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 NUGGCQ68CJ6 796 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 SMYD5Q6GMV2 418 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 KIAA1211LQ6NV74 962 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 MMS22LQ6ZRQ5 1243 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 UNC45BQ8IWX7 931 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 TSTD1Q8NFU3 115 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 OLIG1Q8TAK6 271 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 IPO4Q8TEX9 1081 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms