RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PCDHGB5Q9Y5G0 923 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 MAD1L1Q9Y6D9 718 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF638Q14966 1978 aaKnown RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 PHIPQ8WWQ0 1821 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 E2F8A0AVK6 867 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 ARHGAP42A6NI28 874 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 A6NJR5 290 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF195O14628 629 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 CCNT2O60583 730 aaKnown RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 FKBP6O75344 327 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 STK10O94804 968 aaKnown RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 PROCP04070 461 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 ALDOAP04075 364 aaKnown RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 PRKCBP05771 671 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 F7P08709 466 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 PDGFRAP16234 1089 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 UBA1P22314 1058 aaKnown RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 MAGEA6P43360 314 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 GBE1Q04446 702 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 ACAP1Q15027 740 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 SLC5A9Q2M3M2 681 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 CCDC14Q49A88 953 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 PPM1JQ5JR12 505 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 TJAP1Q5JTD0 557 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 CFAP157Q5JU67 520 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 EFHC1Q5JVL4 640 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 N4BP2L1Q5TBK1 243 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 RASIP1Q5U651 963 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 ACAD11Q709F0 780 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 ADGRG6Q86SQ4 1221 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 RASSF3Q86WH2 238 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 TRIM50Q86XT4 487 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 PHTF2Q8N3S3 785 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 C1orf127Q8N9H9 656 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 RNF149Q8NC42 400 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 NETO2Q8NC67 525 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 GSDMBQ8TAX9 411 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 TFB1MQ8WVM0 346 aaKnown RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 CDHR1Q96JP9 859 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 SORT1Q99523 831 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 EBNA1BP2Q99848 306 aaKnown RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 CNPY3Q9BT09 278 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 OXCT2Q9BYC2 517 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 MRPL4Q9BYD3 311 aaKnown RBP5.6□□□□□ -1.51
LIMA1-212ENST00000552491 CYP4F11Q9HBI6 524 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 PCDH18Q9HCL0 1135 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 PTPRHQ9HD43 1115 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 ZDHHC7Q9NXF8 308 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 IL1RAPL1Q9NZN1 696 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 BTBD7Q9P203 1132 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 SORCS3Q9UPU3 1222 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 MFHAS1Q9Y4C4 1052 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 PSAT1Q9Y617 370 aa5.6□□□□□ -1.51
LIMA1-212ENST00000552491 LOC100653049A0A140TA62 436 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 ZBTB42B2RXF5 422 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 H3BNX3 289 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 BIRC5O15392 142 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 SIN3BO75182 1162 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 CILPO75339 1184 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 MAFO75444 373 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 CSDE1O75534 798 aaKnown RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 KRT34O76011 436 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 KRT38O76015 456 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 ZBED1O96006 694 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 PFKMP08237 780 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 IQCF3P0C7M6 154 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 ITGAXP20702 1163 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 GPD1P21695 349 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 PROZP22891 400 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 SLC1A6P48664 564 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 RGS7P49802 495 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 IDH3AP50213 366 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 ATXN1P54253 815 aaKnown RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 HMGCS2P54868 508 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 BACE1P56817 501 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 BCAR1P56945 870 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 BTKQ06187 659 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 CXCL9Q07325 125 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 LAMTOR4Q0VGL1 99 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 ASPHQ12797 758 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 DYNC1I2Q13409 638 aaKnown RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 PDE1CQ14123 709 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 HIC1Q14526 733 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 PCLAFQ15004 111 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 TCHHL1Q5QJ38 904 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 NBPF12Q5TAG4 269 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 SCYL2Q6P3W7 929 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 AAGABQ6PD74 315 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 MARK2Q7KZI7 788 aaKnown RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 HPS6Q86YV9 775 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 HS6ST3Q8IZP7 471 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 C12orf29Q8N999 325 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 PIWIL2Q8TC59 973 aaKnown RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 SLC26A7Q8TE54 656 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 JDP2Q8WYK2 163 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 SNRNP25Q9BV90 132 aaKnown RBP5.59□□□□□ -1.51
LIMA1-212ENST00000552491 MINDY3Q9H8M7 445 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF358Q9NW07 568 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 ASNSD1Q9NWL6 643 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms