RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 DHCR24Q15392 516 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 ARL13BQ3SXY8 428 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 TRIM67Q6ZTA4 783 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 RALGPS2Q86X27 583 aaPredicted RBP14.3□□□□□ -0.12
PTCH1-213ENST00000546820 TXLNBQ8N3L3 684 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 CPXM2Q8N436 756 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 CCDC112Q8NEF3 446 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 FNIP1Q8TF40 1166 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 ASIC4Q96FT7 647 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 EIF3CQ99613 913 aaKnown RBP14.3□□□□□ -0.12
PTCH1-213ENST00000546820 HPS4Q9NQG7 708 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 SPHK2Q9NRA0 654 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 HEBP1Q9NRV9 189 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 CTTNBP2NLQ9P2B4 639 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 UVRAGQ9P2Y5 699 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 LCMT1Q9UIC8 334 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 STOML2Q9UJZ1 356 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 CA14Q9ULX7 337 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 NENFQ9UMX5 172 aa14.3□□□□□ -0.12
PTCH1-213ENST00000546820 MRPS17Q9Y2R5 130 aaKnown RBP14.3□□□□□ -0.12
PTCH1-213ENST00000546820 MYO1FO00160 1098 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 STK25O00506 426 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 ATMINO43313 823 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-213ENST00000546820 NDUFA10O95299 355 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 MOCS2O96007 188 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-213ENST00000546820 PSMA2P25787 234 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 KRT83P78385 493 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 ACAP1Q15027 740 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 MLF2Q15773 248 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-213ENST00000546820 CDO1Q16878 200 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 ANO4Q32M45 955 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 PREPLQ4J6C6 727 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-213ENST00000546820 LY6G5CQ5SRR4 150 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 TRNP1Q6NT89 227 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 RHBDF2Q6PJF5 856 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 ZNF852Q6ZMS4 543 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 TTC8Q8TAM2 541 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 FAM172AQ8WUF8 416 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 CENPIQ92674 756 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-213ENST00000546820 TMA16Q96EY4 203 aaKnown RBP14.29□□□□□ -0.12
PTCH1-213ENST00000546820 NELL2Q99435 816 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 NUP85Q9BW27 656 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 ARHGEF3Q9NR81 526 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 PIGVQ9NUD9 493 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 IP6K2Q9UHH9 426 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 PCDHA13Q9Y5I0 950 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 PIAS3Q9Y6X2 628 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 UNC80Q8N2C7 3258 aa14.29□□□□□ -0.12
PTCH1-213ENST00000546820 TYW5A2RUC4 315 aaKnown RBP14.28□□□□□ -0.12
PTCH1-213ENST00000546820 SOWAHDA6NJG2 315 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 CYP17A1P05093 508 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 ADH5P11766 374 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 PIGHQ14442 188 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-213ENST00000546820 C15orf59Q2T9L4 293 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-213ENST00000546820 MPPE1Q53F39 396 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 SCYL2Q6P3W7 929 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 TPGS1Q6ZTW0 290 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 TPRG1Q6ZUI0 275 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 BNIPLQ7Z465 357 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 TMEM25Q86YD3 366 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 RHOT2Q8IXI1 618 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 FAM217AQ8IXS0 508 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 SIX5Q8N196 739 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 XPO6Q96QU8 1125 aaKnown RBP14.28□□□□□ -0.12
PTCH1-213ENST00000546820 HAPLN3Q96S86 360 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 BBS2Q9BXC9 721 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 TKTL2Q9H0I9 626 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 MFSD1Q9H3U5 465 aa14.28□□□□□ -0.12
PTCH1-213ENST00000546820 NCOR1O75376 2440 aa14.27□□□□□ -0.12
PTCH1-213ENST00000546820 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-213ENST00000546820 SPECC1L-ADORA2AF8WAN1 911 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 TFE3P19532 575 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-213ENST00000546820 GJA4P35212 333 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 STARD6P59095 220 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 LRRC31Q6UY01 552 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 NUDT18Q6ZVK8 323 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 FAM131BQ86XD5 332 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 CCDC117Q8IWD4 279 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-213ENST00000546820 LRRC8AQ8IWT6 810 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 DDI1Q8WTU0 396 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 FAM3CQ92520 227 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 ARHGEF26Q96DR7 871 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 C1orf74Q96LT6 269 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 PACSIN1Q9BY11 444 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 ARHGEF38Q9NXL2 777 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 MARK1Q9P0L2 795 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 ANAPC7Q9UJX3 599 aa14.27□□□□□ -0.13
PTCH1-213ENST00000546820 GOLGA6L7A0A1B0GV03 622 aa14.26□□□□□ -0.13
PTCH1-213ENST00000546820 KRBA1A5PL33 1030 aa14.26□□□□□ -0.13
PTCH1-213ENST00000546820 TMEM221A6NGB7 291 aa14.26□□□□□ -0.13
PTCH1-213ENST00000546820 OTOL1A6NHN0 477 aaPredicted RBP14.26□□□□□ -0.13
PTCH1-213ENST00000546820 NEDD8-MDP1E9PL57 170 aa14.26□□□□□ -0.13
PTCH1-213ENST00000546820 F5H5T6 163 aa14.26□□□□□ -0.13
PTCH1-213ENST00000546820 M0R296 226 aa14.26□□□□□ -0.13
PTCH1-213ENST00000546820 NCAM2O15394 837 aa14.26□□□□□ -0.13
PTCH1-213ENST00000546820 HOXC11O43248 304 aaPredicted RBP14.26□□□□□ -0.13
PTCH1-213ENST00000546820 CCP110O43303 1012 aa14.26□□□□□ -0.13
PTCH1-213ENST00000546820 TSPAN3O60637 253 aa14.26□□□□□ -0.13
PTCH1-213ENST00000546820 PAGE1O75459 146 aa14.26□□□□□ -0.13
PTCH1-213ENST00000546820 PTMAP06454 111 aaKnown RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms