RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 YJEFN3A6XGL0 299 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 E7ENQ6 273 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 SYPP08247 313 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 LCP1P13796 627 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 CD6P30203 668 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 OXTRP30559 389 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 SLC11A2P49281 568 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 DAOAP59103 153 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 PAK1Q13153 545 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 ENPP2Q13822 863 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 ST3GAL2Q16842 350 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 FUT11Q495W5 492 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 PKDCCQ504Y2 493 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 ISM2Q6H9L7 571 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 MSANTD2Q6P1R3 559 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 SERPINA13PQ6UXR4 307 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 UNC45BQ8IWX7 931 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 RGL4Q8IZJ4 473 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 TRIML1Q8N9V2 468 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 RBBP8NLQ8NC74 664 aaPredicted RBP13.69□□□□□ -0.22
RTN3-213ENST00000543552 EDEM1Q92611 657 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 PRCCQ92733 491 aaPredicted RBP13.69□□□□□ -0.22
RTN3-213ENST00000543552 HSFY1Q96LI6 401 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 DDX50Q9BQ39 737 aaKnown RBP13.69□□□□□ -0.22
RTN3-213ENST00000543552 TMEM74BQ9NUR3 256 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 STOML2Q9UJZ1 356 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 CTNND2Q9UQB3 1225 aa13.69□□□□□ -0.22
RTN3-213ENST00000543552 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.69□□□□□ -0.22
RTN3-213ENST00000543552 TYW5A2RUC4 315 aaKnown RBP13.68□□□□□ -0.22
RTN3-213ENST00000543552 MEI4A8MW99 385 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 WASH3PC4AMC7 463 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 IRAK2O43187 625 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 AFPP02771 609 aaKnown RBP13.68□□□□□ -0.22
RTN3-213ENST00000543552 ACADMP11310 421 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 CD44P16070 742 aaKnown RBP13.68□□□□□ -0.22
RTN3-213ENST00000543552 HOXD9P28356 352 aaPredicted RBP13.68□□□□□ -0.22
RTN3-213ENST00000543552 IL12RB1P42701 662 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 MORC3Q14149 939 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 ZNF234Q14588 700 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 TRIM59Q8IWR1 403 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 SLC35F5Q8WV83 523 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 NDRG1Q92597 394 aaKnown RBP13.68□□□□□ -0.22
RTN3-213ENST00000543552 TMA16Q96EY4 203 aaKnown RBP13.68□□□□□ -0.22
RTN3-213ENST00000543552 SIPA1Q96FS4 1042 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 ZNF419Q96HQ0 510 aaPredicted RBP13.68□□□□□ -0.22
RTN3-213ENST00000543552 FAM81BQ96LP2 452 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 GTPBP2Q9BX10 602 aaKnown RBP13.68□□□□□ -0.22
RTN3-213ENST00000543552 FBRSQ9HAH7 460 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 CAPN10Q9HC96 672 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 SFMBT1Q9UHJ3 866 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 PLA2G4CQ9UP65 541 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 NFE2L3Q9Y4A8 694 aa13.68□□□□□ -0.22
RTN3-213ENST00000543552 KMT2BQ9UMN6 2715 aaPredicted RBP13.68□□□□□ -0.22
RTN3-213ENST00000543552 MAP1BP46821 2468 aaKnown RBP13.67□□□□□ -0.22
RTN3-213ENST00000543552 UPK3BL1B0FP48 263 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 PPP1R3GB7ZBB8 358 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 UPK3BL2E5RIL1 263 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 MED7O43513 233 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 OPHN1O60890 802 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 LTFP02788 710 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 ATP5BP06576 529 aaKnown RBP13.67□□□□□ -0.22
RTN3-213ENST00000543552 EPHX1P07099 455 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 NCAM1P13591 858 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 RGS7P49802 495 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 MARSP56192 900 aaKnown RBP13.67□□□□□ -0.22
RTN3-213ENST00000543552 RING1Q06587 406 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 KCNH2Q12809 1159 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 MEA1Q16626 185 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 FNDC3BQ53EP0 1204 aaKnown RBP13.67□□□□□ -0.22
RTN3-213ENST00000543552 MPP7Q5T2T1 576 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 PMF1Q6P1K2 205 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 ENOSF1Q7L5Y1 443 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 TMPRSS6Q8IU80 811 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 CCDC117Q8IWD4 279 aaPredicted RBP13.67□□□□□ -0.22
RTN3-213ENST00000543552 AHI1Q8N157 1196 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 DEFB119Q8N690 84 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 EHBP1Q8NDI1 1231 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 CADM4Q8NFZ8 388 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 TFAP2BQ92481 460 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 ERLEC1Q96DZ1 483 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 TOE1Q96GM8 510 aaKnown RBP13.67□□□□□ -0.22
RTN3-213ENST00000543552 SERPINB11Q96P15 392 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 ZDHHC5Q9C0B5 715 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 SLC6A17Q9H1V8 727 aa13.67□□□□□ -0.22
RTN3-213ENST00000543552 USP36Q9P275 1121 aaKnown RBP13.67□□□□□ -0.22
RTN3-213ENST00000543552 CEP192Q8TEP8 1941 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 PI4KAP42356 2102 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 GON4LQ3T8J9 2241 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 BIN1O00499 593 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 ARHGAP33O14559 1287 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 MSI1O43347 362 aaKnown RBP13.66□□□□□ -0.22
RTN3-213ENST00000543552 TSPAN3O60637 253 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 IGLV3-27P01718 113 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 KRT5P13647 590 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 BRD2P25440 801 aaKnown RBP13.66□□□□□ -0.22
RTN3-213ENST00000543552 RDXP35241 583 aaKnown RBP13.66□□□□□ -0.22
RTN3-213ENST00000543552 ACADSBP45954 432 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 NNTQ13423 1086 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 HNRNPDQ14103 355 aaKnown RBP13.66□□□□□ -0.22
RTN3-213ENST00000543552 PLEKHG6Q3KR16 790 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms