RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	DLGAP2	Q9P1A6	1054 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	ZC3H7B	Q9UGR2	993 aa	Known RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	PLLP	Q9Y342	182 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	TRIP11	Q15643	1979 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	DOCK3	Q8IZD9	2030 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	EME2	A4GXA9	379 aa	Predicted RBP	12.93	□□□□□ -0.34
RNF4-222	ENST00000541204		I3L4J1	428 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	KLF11	O14901	512 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	SPAG6	O75602	509 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	KRT37	O76014	449 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	SNRPA	P09012	282 aa	Known RBP	12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	SDC4	P31431	198 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	MAP2K5	Q13163	448 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	FBXO47	Q5MNV8	452 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	MMADHC	Q9H3L0	296 aa	Predicted RBP	12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	PLEKHA5	Q9HAU0	1116 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	PLAC1	Q9HBJ0	212 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	SMYD2	Q9NRG4	433 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	PPARGC1A	Q9UBK2	798 aa	Known RBP	12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	WASF2	Q9Y6W5	498 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	SYNJ2BP-COX16	A0A087WUM0	186 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	ENDOD1	O94919	500 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	IL1B	P01584	269 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	APRT	P07741	180 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	ZNF865	P0CJ78	1059 aa	Predicted RBP	12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	ACAT1	P24752	427 aa	Known RBP	12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	RBL1	P28749	1068 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	GNL1	P36915	607 aa	Predicted RBP	12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	PSEN2	P49810	448 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	RABGGTB	P53611	331 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	KDSR	Q06136	332 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	CHI3L2	Q15782	390 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	ZBTB6	Q15916	424 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	NETO2	Q8NC67	525 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	ARRDC4	Q8NCT1	418 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	E2F7	Q96AV8	911 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	ZFP42	Q96MM3	310 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	POPDC2	Q9HBU9	364 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	PNPLA8	Q9NP80	782 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	COX16	Q9P0S2	106 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	STX18	Q9P2W9	335 aa	Known RBP	12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	LRCH1	Q9Y2L9	728 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	CIT	O14578	2027 aa		12.93	□□□□□ -0.34
RNF4-222	ENST00000541204	SMIM35	A0A1B0GVV1	85 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	CAPN14	A8MX76	684 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	KPNA7	A9QM74	516 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	RFPL1	O75677	317 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	KCNA4	P22459	653 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	ZNF157	P51786	506 aa	Predicted RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	SLC6A3	Q01959	620 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	OCRL	Q01968	901 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	TWF2	Q6IBS0	349 aa	Known RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	CAND1	Q86VP6	1230 aa	Known RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	NT5DC4	Q86YG4	428 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	PLD5	Q8N7P1	536 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	RBM15B	Q8NDT2	890 aa	Known RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	SLC2A14	Q8TDB8	520 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	SLC35F5	Q8WV83	523 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	CLPTM1L	Q96KA5	538 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	RNF157	Q96PX1	679 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	C20orf27	Q9GZN8	174 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	KCNK4	Q9NYG8	393 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	PAK5	Q9P286	719 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	KIAA1257	Q9ULG3	409 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	MEIS3P2	A8K0S8	358 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	SKI	P12755	728 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	SP100	P23497	879 aa	Predicted RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	AQP5	P55064	265 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	TFDP2	Q14188	446 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	LBR	Q14739	615 aa	Known RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	ACAP1	Q15027	740 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	FAM47C	Q5HY64	1035 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	MORN1	Q5T089	497 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	THEMIS2	Q5TEJ8	643 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	IRGC	Q6NXR0	463 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	CCDC110	Q8TBZ0	833 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	KBTBD7	Q8WVZ9	684 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	C7orf26	Q96N11	449 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	SNX25	Q9H3E2	840 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	MBLAC1	A4D2B0	266 aa	Predicted RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204		F5H423	210 aa	Predicted RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	TOP3B	O95985	862 aa	Known RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	CSH1	P0DML2	217 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	CSH2	P0DML3	217 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	AP1B1	Q10567	949 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	PKDCC	Q504Y2	493 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	TMPRSS6	Q8IU80	811 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	NUDCD3	Q8IVD9	361 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	SMC1B	Q8NDV3	1235 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	SNRNP25	Q9BV90	132 aa	Known RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	AP5M1	Q9H0R1	490 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	SPATS2L	Q9NUQ6	558 aa	Known RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	PCMTD2	Q9NV79	361 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	ETNK2	Q9NVF9	386 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	UBQLN1	Q9UMX0	589 aa	Known RBP	12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	NR2E3	Q9Y5X4	410 aa		12.92	□□□□□ -0.34
RNF4-222	ENST00000541204	MYADML2	A6NDP7	307 aa		12.91	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms