RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 NUDT18Q6ZVK8 323 aa18.2■□□□□ 0.5
CLSTN3-210ENST00000540931 BNIPLQ7Z465 357 aa18.2■□□□□ 0.5
CLSTN3-210ENST00000540931 NUP85Q9BW27 656 aa18.2■□□□□ 0.5
CLSTN3-210ENST00000540931 TSGA10Q9BZW7 698 aa18.2■□□□□ 0.5
CLSTN3-210ENST00000540931 C5orf42Q9H799 3197 aa18.2■□□□□ 0.5
CLSTN3-210ENST00000540931 BTNL10A8MVZ5 291 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 KCNU1A8MYU2 1149 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 MTA2O94776 668 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 PSMA2P25787 234 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 PCK1P35558 622 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 HADHBP55084 474 aaKnown RBP18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 KIF5AQ12840 1032 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 NME3Q13232 169 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 RUNX3Q13761 415 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 E2F5Q15329 346 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 ITPRIPL2Q3MIP1 535 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 CCDC14Q49A88 953 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 MPP7Q5T2T1 576 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 TTC39BQ5VTQ0 682 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 Q6ZNB5 142 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 KIAA1328Q86T90 577 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 TMEM139Q8IV31 216 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 PSTKQ8IV42 348 aaKnown RBP18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 CCDC117Q8IWD4 279 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 SUGP1Q8IWZ8 645 aaKnown RBP18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 ADGRG2Q8IZP9 1017 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 NIPA2Q8N8Q9 360 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 CCDC26Q8TAB7 109 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 ZNF564Q8TBZ8 553 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 C1orf74Q96LT6 269 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 CFAP57Q96MR6 1250 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 HAPLN3Q96S86 360 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 SMG9Q9H0W8 520 aaKnown RBP18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 DONSONQ9NYP3 566 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 MUTYHQ9UIF7 546 aa18.19■□□□□ 0.5
CLSTN3-210ENST00000540931 MAN2B1O00754 1011 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 MDM4O15151 490 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 ACSL4O60488 711 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 IRF1P10914 325 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 VAV2P52735 878 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 RPL7AP62424 266 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 PRKCQQ04759 706 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 GAD2Q05329 585 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 HADHQ16836 314 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 POTEHQ6S545 545 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 DENND1CQ8IV53 801 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 FAM217AQ8IXS0 508 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 EMC1Q8N766 993 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 JOSD2Q8TAC2 188 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 FAM172AQ8WUF8 416 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 NTAN1Q96AB6 310 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 FCRL2Q96LA5 508 aaPredicted RBP18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 TBCBQ99426 244 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 ARHGEF38Q9NXL2 777 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 ANAPC7Q9UJX3 599 aa18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 MRPS17Q9Y2R5 130 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-210ENST00000540931 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 MSI1O43347 362 aaKnown RBP18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 KRT86O43790 486 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 ASGR2P07307 311 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 HMBSP08397 361 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 CCDC175P0C221 793 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 MAN1A1P33908 653 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 HTR7P34969 479 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 EIF2DP41214 584 aaKnown RBP18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 SLC1A1P43005 524 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 ZXDBP98169 803 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 ATP11AP98196 1134 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 EML3Q32P44 896 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 MPPE1Q53F39 396 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 BOLA3Q53S33 107 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 LRRC31Q6UY01 552 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 RALGPS2Q86X27 583 aaPredicted RBP18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 TTC16Q8NEE8 873 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 SLC35G2Q8TBE7 412 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 RSAD2Q8WXG1 361 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 XPO6Q96QU8 1125 aaKnown RBP18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 PPP1R9BQ96SB3 815 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 NELL2Q99435 816 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 PLA2G2FQ9BZM2 168 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 SPHK2Q9NRA0 654 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 MARK1Q9P0L2 795 aa18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 AGO1Q9UL18 857 aaKnown RBP18.17■□□□□ 0.5
CLSTN3-210ENST00000540931 PJA2O43164 708 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 PRPSAP2O60256 369 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 GREM1O60565 184 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 OXCT1P55809 520 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 GRM2Q14416 872 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 ZC3H12AQ5D1E8 599 aaKnown RBP18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 RABGAP1LQ5R372 815 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 RAD9BQ6WBX8 426 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 SLFN11Q7Z7L1 901 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 PHLDB2Q86SQ0 1253 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 ADAM32Q8TC27 787 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 EDAQ92838 391 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 RSPRY1Q96DX4 576 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 RPP25Q9BUL9 199 aaKnown RBP18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 SLC2A11Q9BYW1 496 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 TKTL2Q9H0I9 626 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 ECT2Q9H8V3 914 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms