RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 C10orf120Q5SQS8 335 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 PTCRAQ6ISU1 281 aaPredicted RBP10.96□□□□□ -0.65
VPS33A-204ENST00000540669 CC2D1AQ6P1N0 951 aaPredicted RBP10.96□□□□□ -0.65
VPS33A-204ENST00000540669 DAAM2Q86T65 1068 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 FAM131BQ86XD5 332 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 KATNAL2Q8IYT4 538 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 SLC35F6Q8N357 371 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 ADAM32Q8TC27 787 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 RNF139Q8WU17 664 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 USP13Q92995 863 aaPredicted RBP10.96□□□□□ -0.65
VPS33A-204ENST00000540669 RIPOR3Q96MK2 946 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 GCNAQ96QF7 691 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 MYADMQ96S97 322 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 SNRNP25Q9BV90 132 aaKnown RBP10.96□□□□□ -0.65
VPS33A-204ENST00000540669 ATXN3LQ9H3M9 355 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 FAM204AQ9H8W3 233 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 KIF9Q9HAQ2 790 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 OBP2AQ9NY56 170 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 EPS15L1Q9UBC2 864 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 ZNF212Q9UDV6 495 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 SFMBT1Q9UHJ3 866 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 CDH7Q9ULB5 785 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 FZD10Q9ULW2 581 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 USP18Q9UMW8 372 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 USTQ9Y2C2 406 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 PCDHA3Q9Y5H8 950 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 ZFP37Q9Y6Q3 630 aaPredicted RBP10.96□□□□□ -0.65
VPS33A-204ENST00000540669 TRIOO75962 3097 aa10.96□□□□□ -0.66
VPS33A-204ENST00000540669 MUC22E2RYF6 1773 aaPredicted RBP10.95□□□□□ -0.66
VPS33A-204ENST00000540669 CCDC66A2RUB6 948 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 ESPNB1AK53 854 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 KIF5CO60282 957 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 FTCDO95954 541 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 RARAP10276 462 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 CCR1P32246 355 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 ADRA1BP35368 520 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 NOP2P46087 812 aaKnown RBP10.95□□□□□ -0.66
VPS33A-204ENST00000540669 KCNQ1P51787 676 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 TBX4P57082 545 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 COG7P83436 770 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 DEUP1Q05D60 604 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 MTA1Q13330 715 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 CBX2Q14781 532 aaPredicted RBP10.95□□□□□ -0.66
VPS33A-204ENST00000540669 CA9Q16790 459 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 CDO1Q16878 200 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 FAM133BQ5BKY9 247 aaKnown RBP10.95□□□□□ -0.66
VPS33A-204ENST00000540669 GPR158Q5T848 1215 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 PIK3R6Q5UE93 754 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 PAPD7Q5XG87 772 aaKnown RBP10.95□□□□□ -0.66
VPS33A-204ENST00000540669 NUGGCQ68CJ6 796 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 NADSYN1Q6IA69 706 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 HTR3DQ70Z44 454 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 RHOT1Q8IXI2 618 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 ARL14EPQ8N8R7 260 aaPredicted RBP10.95□□□□□ -0.66
VPS33A-204ENST00000540669 MAB21L3Q8N8X9 362 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 P2RY11Q96G91 374 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 LRRC3BQ96PB8 259 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 ALS2CR12Q96Q35 445 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 HAPLN3Q96S86 360 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 CYP2S1Q96SQ9 504 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 OSBPL2Q9H1P3 480 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 CARD9Q9H257 536 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.95□□□□□ -0.66
VPS33A-204ENST00000540669 XPO7Q9UIA9 1087 aaKnown RBP10.95□□□□□ -0.66
VPS33A-204ENST00000540669 RASAL2Q9UJF2 1139 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 CCL26Q9Y258 94 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 JRKLQ9Y4A0 524 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 HYOU1Q9Y4L1 999 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 CPQQ9Y646 472 aa10.95□□□□□ -0.66
VPS33A-204ENST00000540669 ANHXE9PGG2 379 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 H3BQ06 376 aaPredicted RBP10.94□□□□□ -0.66
VPS33A-204ENST00000540669 CES2O00748 559 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 RNF8O76064 485 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 TUBB4AP04350 444 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 CKMP06732 381 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 KRT7P08729 469 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 SLC2A3P11169 496 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 HDCP19113 662 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 IL4RP24394 825 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 HTR7P34969 479 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 FCHO2Q0JRZ9 810 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 SMAD2Q15796 467 aaKnown RBP10.94□□□□□ -0.66
VPS33A-204ENST00000540669 ARHGAP15Q53QZ3 475 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 BOLA3Q53S33 107 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 ZC3H12AQ5D1E8 599 aaKnown RBP10.94□□□□□ -0.66
VPS33A-204ENST00000540669 FAM78AQ5JUQ0 283 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 ZNF569Q5MCW4 686 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 ATAT1Q5SQI0 421 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 ACBD5Q5T8D3 534 aaPredicted RBP10.94□□□□□ -0.66
VPS33A-204ENST00000540669 RSRC2Q7L4I2 434 aaKnown RBP10.94□□□□□ -0.66
VPS33A-204ENST00000540669 ANKS1BQ7Z6G8 1248 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 DDX42Q86XP3 938 aaKnown RBP eCLIP10.94□□□□□ -0.66
VPS33A-204ENST00000540669 MIB1Q86YT6 1006 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 ING5Q8WYH8 240 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 SMARCD2Q92925 531 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 BTN2A3PQ96KV6 586 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 C1orf74Q96LT6 269 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 PIDD1Q9HB75 910 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 PCDH18Q9HCL0 1135 aa10.94□□□□□ -0.66
VPS33A-204ENST00000540669 TMPRSS4Q9NRS4 437 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms