RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 ADGRF1Q5T601 910 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 SH3PXD2AQ5TCZ1 1133 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 NUGGCQ68CJ6 796 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 TTI2Q6NXR4 508 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 BHLHA9Q7RTU4 235 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 METTL3Q86U44 580 aaKnown RBP13.7□□□□□ -0.22
RTN3-207ENST00000536011 HDDC3Q8N4P3 179 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 UBA3Q8TBC4 463 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 WFIKKN2Q8TEU8 576 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 NELFBQ8WX92 580 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 PIWIL1Q96J94 861 aaKnown RBP13.7□□□□□ -0.22
RTN3-207ENST00000536011 HSPA12BQ96MM6 686 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 PHF12Q96QT6 1004 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 TRIM62Q9BVG3 475 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 CIPCQ9C0C6 399 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 PRDM16Q9HAZ2 1276 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 ELOVL2Q9NXB9 296 aa13.7□□□□□ -0.22
RTN3-207ENST00000536011 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.7□□□□□ -0.22
RTN3-207ENST00000536011 YJEFN3A6XGL0 299 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 E7ENQ6 273 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 SYPP08247 313 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 LCP1P13796 627 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 CD6P30203 668 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 OXTRP30559 389 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 SLC11A2P49281 568 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 DAOAP59103 153 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 PAK1Q13153 545 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 ENPP2Q13822 863 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 ST3GAL2Q16842 350 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 FUT11Q495W5 492 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 PKDCCQ504Y2 493 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 ISM2Q6H9L7 571 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 MSANTD2Q6P1R3 559 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 SERPINA13PQ6UXR4 307 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 UNC45BQ8IWX7 931 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 RGL4Q8IZJ4 473 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 TRIML1Q8N9V2 468 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 RBBP8NLQ8NC74 664 aaPredicted RBP13.69□□□□□ -0.22
RTN3-207ENST00000536011 EDEM1Q92611 657 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 PRCCQ92733 491 aaPredicted RBP13.69□□□□□ -0.22
RTN3-207ENST00000536011 HSFY1Q96LI6 401 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 DDX50Q9BQ39 737 aaKnown RBP13.69□□□□□ -0.22
RTN3-207ENST00000536011 TMEM74BQ9NUR3 256 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 STOML2Q9UJZ1 356 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 CTNND2Q9UQB3 1225 aa13.69□□□□□ -0.22
RTN3-207ENST00000536011 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.69□□□□□ -0.22
RTN3-207ENST00000536011 TYW5A2RUC4 315 aaKnown RBP13.68□□□□□ -0.22
RTN3-207ENST00000536011 MEI4A8MW99 385 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 WASH3PC4AMC7 463 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 IRAK2O43187 625 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 AFPP02771 609 aaKnown RBP13.68□□□□□ -0.22
RTN3-207ENST00000536011 ACADMP11310 421 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 HOXD9P28356 352 aaPredicted RBP13.68□□□□□ -0.22
RTN3-207ENST00000536011 IL12RB1P42701 662 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 MORC3Q14149 939 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 ZNF234Q14588 700 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 TRIM59Q8IWR1 403 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 SLC35F5Q8WV83 523 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 NDRG1Q92597 394 aaKnown RBP13.68□□□□□ -0.22
RTN3-207ENST00000536011 TMA16Q96EY4 203 aaKnown RBP13.68□□□□□ -0.22
RTN3-207ENST00000536011 SIPA1Q96FS4 1042 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 ZNF419Q96HQ0 510 aaPredicted RBP13.68□□□□□ -0.22
RTN3-207ENST00000536011 FAM81BQ96LP2 452 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 GTPBP2Q9BX10 602 aaKnown RBP13.68□□□□□ -0.22
RTN3-207ENST00000536011 FBRSQ9HAH7 460 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 CAPN10Q9HC96 672 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 SFMBT1Q9UHJ3 866 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 PLA2G4CQ9UP65 541 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 NFE2L3Q9Y4A8 694 aa13.68□□□□□ -0.22
RTN3-207ENST00000536011 KMT2BQ9UMN6 2715 aaPredicted RBP13.68□□□□□ -0.22
RTN3-207ENST00000536011 MAP1BP46821 2468 aaKnown RBP13.67□□□□□ -0.22
RTN3-207ENST00000536011 UPK3BL1B0FP48 263 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 PPP1R3GB7ZBB8 358 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 UPK3BL2E5RIL1 263 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 MED7O43513 233 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 OPHN1O60890 802 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 LTFP02788 710 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 ATP5BP06576 529 aaKnown RBP13.67□□□□□ -0.22
RTN3-207ENST00000536011 EPHX1P07099 455 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 NCAM1P13591 858 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 RGS7P49802 495 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 MARSP56192 900 aaKnown RBP13.67□□□□□ -0.22
RTN3-207ENST00000536011 RING1Q06587 406 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 KCNH2Q12809 1159 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 MEA1Q16626 185 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 FNDC3BQ53EP0 1204 aaKnown RBP13.67□□□□□ -0.22
RTN3-207ENST00000536011 MPP7Q5T2T1 576 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 PMF1Q6P1K2 205 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 ENOSF1Q7L5Y1 443 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 TMPRSS6Q8IU80 811 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 CCDC117Q8IWD4 279 aaPredicted RBP13.67□□□□□ -0.22
RTN3-207ENST00000536011 AHI1Q8N157 1196 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 DEFB119Q8N690 84 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 EHBP1Q8NDI1 1231 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 CADM4Q8NFZ8 388 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 TFAP2BQ92481 460 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 ERLEC1Q96DZ1 483 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 TOE1Q96GM8 510 aaKnown RBP13.67□□□□□ -0.22
RTN3-207ENST00000536011 SERPINB11Q96P15 392 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 ZDHHC5Q9C0B5 715 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms