RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 LRRC10BA6NIK2 292 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 RETP07949 1114 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 NCAM1P13591 858 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 ATP1A3P13637 1013 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 GABRG2P18507 467 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 EEF1GP26641 437 aaKnown RBP11.1□□□□□ -0.63
CD44-227ENST00000528086 CDH5P33151 784 aaPredicted RBP11.1□□□□□ -0.63
CD44-227ENST00000528086 DGKGP49619 791 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 RING1Q06587 406 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 GOLGA8FQ08AF8 430 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 GOLGA8DPQ0D2H9 430 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 MAPK8IP2Q13387 824 aaPredicted RBP11.1□□□□□ -0.63
CD44-227ENST00000528086 TPD52L1Q16890 204 aaPredicted RBP11.1□□□□□ -0.63
CD44-227ENST00000528086 PLA2G2CQ5R387 149 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 ADGRF1Q5T601 910 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 PIK3R6Q5UE93 754 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 OLFML1Q6UWY5 402 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 FAM183BPQ6ZVS7 135 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 BEND5Q7L4P6 421 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 TADA2BQ86TJ2 420 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 ADIPOR2Q86V24 386 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 FAM114A1Q8IWE2 563 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 TSTD1Q8NFU3 115 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 SLC20A1Q8WUM9 679 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 SLC2A13Q96QE2 648 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 GABRG3Q99928 467 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 NUCKS1Q9H1E3 243 aaKnown RBP11.1□□□□□ -0.63
CD44-227ENST00000528086 SMOC1Q9H4F8 434 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 ANLNQ9NQW6 1124 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 CACNA2D2Q9NY47 1150 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 LIMA1Q9UHB6 759 aaKnown RBP11.1□□□□□ -0.63
CD44-227ENST00000528086 NOCTQ9UK39 431 aaKnown RBP11.1□□□□□ -0.63
CD44-227ENST00000528086 INTS6Q9UL03 887 aaKnown RBP11.1□□□□□ -0.63
CD44-227ENST00000528086 STRIP2Q9ULQ0 834 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 ZNF510Q9Y2H8 683 aa11.1□□□□□ -0.63
CD44-227ENST00000528086 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.1□□□□□ -0.63
CD44-227ENST00000528086 KCNU1A8MYU2 1149 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 F8VZ95 297 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 IRAK2O43187 625 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 GDF9O60383 454 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 ACSL4O60488 711 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 GRAP2O75791 330 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 EPN2O95208 641 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 CYP11B1P15538 503 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 PRKCHP24723 683 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 NTSR1P30989 418 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 CHKAP35790 457 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 P2RY2P41231 377 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 IL12RB1P42701 662 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 ACADSBP45954 432 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 IRAK1P51617 712 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 DGKEP52429 567 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 COPB1P53618 953 aaKnown RBP11.09□□□□□ -0.63
CD44-227ENST00000528086 TBX4P57082 545 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 RPS24P62847 133 aaKnown RBP11.09□□□□□ -0.63
CD44-227ENST00000528086 TYRO3Q06418 890 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 HSF5Q4G112 596 aaPredicted RBP11.09□□□□□ -0.63
CD44-227ENST00000528086 C2CD6Q53TS8 623 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 ZC3H12AQ5D1E8 599 aaKnown RBP11.09□□□□□ -0.63
CD44-227ENST00000528086 CCDC183Q5T5S1 534 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 DHX40Q8IX18 779 aaKnown RBP11.09□□□□□ -0.63
CD44-227ENST00000528086 DEFB106AQ8N104 65 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.09□□□□□ -0.63
CD44-227ENST00000528086 KCNV2Q8TDN2 545 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 RNF139Q8WU17 664 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 EXOC4Q96A65 974 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 AZIN2Q96A70 460 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 MYO19Q96H55 970 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 PPP1R13BQ96KQ4 1090 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 XPO6Q96QU8 1125 aaKnown RBP11.09□□□□□ -0.63
CD44-227ENST00000528086 PRMT1Q99873 361 aaKnown RBP11.09□□□□□ -0.63
CD44-227ENST00000528086 DLL3Q9NYJ7 618 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 THAP10Q9P2Z0 257 aaPredicted RBP11.09□□□□□ -0.63
CD44-227ENST00000528086 NCDNQ9UBB6 729 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 DACH1Q9UI36 760 aa11.09□□□□□ -0.63
CD44-227ENST00000528086 CNOT1A5YKK6 2376 aaKnown RBP11.09□□□□□ -0.63
CD44-227ENST00000528086 DOCK4Q8N1I0 1966 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 ADAMTS9Q9P2N4 1935 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 TCRBV21S2A2A0A5A6 115 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 TEX33O43247 280 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 MED7O43513 233 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 LATS1O95835 1130 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 TRUB2O95900 331 aaKnown RBP11.08□□□□□ -0.64
CD44-227ENST00000528086 MMEP08473 750 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 C7P10643 843 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 HOXB2P14652 356 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 NDUFV2P19404 249 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 CD70P32970 193 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 GABRB2P47870 512 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 HARS2P49590 506 aaKnown RBP11.08□□□□□ -0.64
CD44-227ENST00000528086 YWHAZP63104 245 aaKnown RBP11.08□□□□□ -0.64
CD44-227ENST00000528086 PTK2Q05397 1052 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 NNTQ13423 1086 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 RAPGEF1Q13905 1077 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 SF3A2Q15428 464 aaKnown RBP11.08□□□□□ -0.64
CD44-227ENST00000528086 PTPRNQ16849 979 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 RAB6CQ53S08 254 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 FSCBQ5H9T9 825 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 EOGTQ5NDL2 527 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 TAF3Q5VWG9 929 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms