RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 MTA2O94776 668 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 TXLNBQ8N3L3 684 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 UHRF1Q96T88 793 aaPredicted RBP30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 BRD9Q9H8M2 597 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 TBC1D14Q9P2M4 693 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 A0A0U1RQJ8 604 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 CHADO15335 359 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 TCEAL1Q15170 157 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 BRMS1LQ5PSV4 323 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 ATRIPQ8WXE1 791 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 FAM83CQ9BQN1 747 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 WDCPQ9H6R7 721 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 TMEM51Q9NW97 253 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 XPO7Q9UIA9 1087 aaKnown RBP30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 ZNF510Q9Y2H8 683 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 A0A0A6YYK5 440 aaPredicted RBP30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 PJA2O43164 708 aa30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 NARSO43776 548 aaKnown RBP30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 PIGHQ14442 188 aaPredicted RBP30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 EML3Q32P44 896 aa30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 DAB2IPQ5VWQ8 1189 aa30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 NIPA2Q8N8Q9 360 aa30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 BTN2A3PQ96KV6 586 aa30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 TKTL2Q9H0I9 626 aa30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 LINC00597Q9H2U6 94 aa30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 ANLNQ9NQW6 1124 aa30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 SORCS3Q9UPU3 1222 aa30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 MYOFQ9NZM1 2061 aa30.74■■■□□ 2.51
LIMCH1-211ENST00000509638 KCNU1A8MYU2 1149 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 RNF8O76064 485 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 LATS1O95835 1130 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 CCDC175P0C221 793 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 ARSAP15289 507 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 NOP2P46087 812 aaKnown RBP30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 SLC11A2P49281 568 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 TNK2Q07912 1038 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 PDGFRLQ15198 375 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 ATP6V0D2Q8N8Y2 350 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 ATP2A3Q93084 1043 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 EBF3Q9H4W6 596 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 ARHGEF38Q9NXL2 777 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 DUSP10Q9Y6W6 482 aa30.73■■■□□ 2.51
LIMCH1-211ENST00000509638 ARNTLO00327 626 aa30.72■■■□□ 2.51
LIMCH1-211ENST00000509638 LRCH4O75427 683 aa30.72■■■□□ 2.51
LIMCH1-211ENST00000509638 VCPP55072 806 aaKnown RBP30.72■■■□□ 2.51
LIMCH1-211ENST00000509638 KIF5AQ12840 1032 aa30.72■■■□□ 2.51
LIMCH1-211ENST00000509638 ARFGAP1Q8N6T3 406 aa30.72■■■□□ 2.51
LIMCH1-211ENST00000509638 OTUB2Q96DC9 234 aa30.72■■■□□ 2.51
LIMCH1-211ENST00000509638 TRIM10Q9UDY6 481 aa30.72■■■□□ 2.51
LIMCH1-211ENST00000509638 SLC12A6Q9UHW9 1150 aa30.72■■■□□ 2.51
LIMCH1-211ENST00000509638 SALL4Q9UJQ4 1053 aa30.72■■■□□ 2.51
LIMCH1-211ENST00000509638 DUSP12Q9UNI6 340 aa30.72■■■□□ 2.51
LIMCH1-211ENST00000509638 TMEM110-MUSTN1A8MSY1 372 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 I6L893 689 aaPredicted RBP30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 ACSL4O60488 711 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 SRFP11831 508 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 NADSYN1Q6IA69 706 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 SCYL2Q6P3W7 929 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 CCDC185Q8N715 623 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 IRF7Q92985 503 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 HPS4Q9NQG7 708 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 TMPRSS4Q9NRS4 437 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 LCMT1Q9UIC8 334 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 MUTYHQ9UIF7 546 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 STOML2Q9UJZ1 356 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 BTNL10A8MVZ5 291 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 PROSCO94903 275 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 HADHBP55084 474 aaKnown RBP30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 MESDQ14696 234 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 ACAP1Q15027 740 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 FAM133BQ5BKY9 247 aaKnown RBP30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 AZIN2Q96A70 460 aa30.71■■■□□ 2.51
LIMCH1-211ENST00000509638 PAGE1O75459 146 aa30.7■■■□□ 2.5
LIMCH1-211ENST00000509638 NFATC1O95644 943 aa30.7■■■□□ 2.5
LIMCH1-211ENST00000509638 ADGRF1Q5T601 910 aa30.7■■■□□ 2.5
LIMCH1-211ENST00000509638 FAM217AQ8IXS0 508 aa30.7■■■□□ 2.5
LIMCH1-211ENST00000509638 GTSE1Q9NYZ3 720 aa30.7■■■□□ 2.5
LIMCH1-211ENST00000509638 BUB1O43683 1085 aa30.69■■■□□ 2.5
LIMCH1-211ENST00000509638 MIPP30301 263 aa30.69■■■□□ 2.5
LIMCH1-211ENST00000509638 MTA1Q13330 715 aa30.69■■■□□ 2.5
LIMCH1-211ENST00000509638 ARL13BQ3SXY8 428 aa30.69■■■□□ 2.5
LIMCH1-211ENST00000509638 PIK3R6Q5UE93 754 aa30.69■■■□□ 2.5
LIMCH1-211ENST00000509638 CPNE8Q86YQ8 564 aa30.69■■■□□ 2.5
LIMCH1-211ENST00000509638 CYP17A1P05093 508 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 SLC6A4P31645 630 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 MAN1A1P33908 653 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 PCK1P35558 622 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 GGCXP38435 758 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 ARHGAP25P42331 645 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 MS4A13Q5J8X5 152 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 RAP1GAP2Q684P5 730 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 CHSY1Q86X52 802 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 CPA6Q8N4T0 437 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 DNASE1L2Q92874 299 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 NTAN1Q96AB6 310 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 PEBP4Q96S96 227 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 TSGA10Q9BZW7 698 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 SLC2A4RGQ9NR83 387 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 PCSK1NQ9UHG2 260 aa30.68■■■□□ 2.5
LIMCH1-211ENST00000509638 PPP2R2CQ9Y2T4 447 aa30.68■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms