RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 PLEKHA8P1O95397 391 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 F9P00740 461 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 ANPEPP15144 967 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 OGNP20774 298 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 CDK8P49336 464 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 CDC16Q13042 620 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 FAM92BQ6ZTR7 304 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 SPPL2AQ8TCT8 520 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 AENQ8WTP8 325 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 CITED4Q96RK1 184 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 PUS7LQ9H0K6 701 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 FAM49BQ9NUQ9 324 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 DNAJC11Q9NVH1 559 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 PGRMC2O15173 223 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 ITIH1P19827 911 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 PTSQ03393 145 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 MTA1Q13330 715 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 CCNIQ14094 377 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 LIN52Q52LA3 116 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 AKIRIN2Q53H80 203 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 ERAP2Q6P179 960 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 NECAB2Q7Z6G3 386 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 PROSER1Q86XN7 944 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 ZNF276Q8N554 614 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 SLC20A1Q8WUM9 679 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 PRCCQ92733 491 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 RERGLQ9H628 205 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 CORO2BQ9UQ03 480 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 YEATS2Q9ULM3 1422 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 DPYSL4O14531 572 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 CD4P01730 458 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 NR2F6P10588 404 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 KCNJ1P48048 391 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 USP46P62068 366 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 PRR5LQ6MZQ0 368 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 SMIM5Q71RC9 77 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 CAB39LQ9H9S4 337 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 AATKQ6ZMQ8 1374 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 CPSF1Q10570 1443 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 DLG1Q12959 904 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 OOSP2Q86WS3 158 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 FAM126BQ8IXS8 530 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 ACOT12Q8WYK0 555 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 ZNF75CPQ92670 426 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 MUC13Q9H3R2 512 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 ELOVL6Q9H5J4 265 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 ZNF302Q9NR11 478 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 STK32BQ9NY57 414 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 SLC25A13Q9UJS0 675 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 RAB26Q9ULW5 256 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 PEX16Q9Y5Y5 336 aa11.49□□□□□ -0.57
LIMCH1-208ENST00000508501 CLRN2A0PK11 232 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 G3V2T6 193 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ATP6V1G1O75348 118 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SNX4O95219 450 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 NADKO95544 446 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ALDH1A1P00352 501 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 FAM228BP0C875 321 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 CYP2C9P11712 490 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 FOSL2P15408 326 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 EIF2AK2P19525 551 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 IST1P53990 364 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 FMR1Q06787 632 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 BLMHQ13867 455 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 FAM71DQ8N9W8 422 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 AFG1LQ8WV93 481 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 TUBGCP5Q96RT8 1024 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 FAM129BQ96TA1 746 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SEPHS2Q99611 448 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ANKZF1Q9H8Y5 726 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 COPS7BQ9H9Q2 264 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ASNSP08243 561 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 NR4A1P22736 598 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 UBXN2AP68543 259 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ALFQ53S48 1182 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 FBXO31Q5XUX0 539 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SYCE2Q6PIF2 218 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ARCQ7LC44 396 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 TMC3Q7Z5M5 1100 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SAMD3Q8N6K7 520 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 TRPV3Q8NET8 790 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SLC7A14Q8TBB6 771 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 HM13Q8TCT9 377 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 TMC2Q8TDI7 906 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ERMAPQ96PL5 475 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 BTBD9Q96Q07 612 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 GPR63Q9BZJ6 419 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 NMRAL1Q9HBL8 299 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 CRLS1Q9UJA2 301 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 GTF2A1LQ9UNN4 478 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 DNMBPQ6XZF7 1577 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 LOC100506127A0A0U1RQW1 187 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 CLDN25C9JDP6 229 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 IFNA7P01567 189 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SERPIND1P05546 499 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 PCNAP12004 261 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 MZF1P28698 734 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 S100A2P29034 98 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SLC16A2P36021 539 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms