RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 HBS1LQ9Y450 684 aaKnown RBP12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 TP53BP1Q12888 1972 aaPredicted RBP12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 CACNA1EQ15878 2313 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 MEI4A8MW99 385 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 UPK3BL1B0FP48 263 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 KCNJ18B7U540 433 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 UPK3BL2E5RIL1 263 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 PSMA7O14818 248 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 MSI1O43347 362 aaKnown RBP12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 TSPAN3O60637 253 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 SETSIPP0DME0 302 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 LCP1P13796 627 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 HOXD9P28356 352 aaPredicted RBP12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 FMO5P49326 533 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 HARS2P49590 506 aaKnown RBP12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 RGS7P49802 495 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 ZNF132P52740 706 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 ARID5AQ03989 594 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 PKDCCQ504Y2 493 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 MPPE1Q53F39 396 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 WDR45BQ5MNZ6 344 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 TMEM215Q68D42 235 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 ISM2Q6H9L7 571 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 TMEM270Q6UE05 265 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 SERPINA13PQ6UXR4 307 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 METTL3Q86U44 580 aaKnown RBP12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 TMPRSS6Q8IU80 811 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 KCTD13Q8WZ19 329 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 TFAP2BQ92481 460 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 PRCCQ92733 491 aaPredicted RBP12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 FOXJ1Q92949 421 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 NT5C1BQ96P26 610 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 SCNM1Q9BWG6 230 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 GPR174Q9BXC1 333 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 TMEM121BQ9BXQ6 578 aaPredicted RBP12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 METTL14Q9HCE5 456 aaKnown RBP12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 CNGB3Q9NQW8 809 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 ITM2CQ9NQX7 267 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 WSB2Q9NYS7 404 aaPredicted RBP12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 SUSD2Q9UGT4 822 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 LAMA1P25391 3075 aa12.05□□□□□ -0.48
HMGCS1-204ENST00000507293 TMEM131Q92545 1883 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 M0QYV0 167 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 PIK3R2O00459 728 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 HYAL3O43820 417 aaPredicted RBP12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 EPHX1P07099 455 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 PAEPP09466 180 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 NCAM1P13591 858 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 HLA-EP13747 358 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 CD59P13987 128 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 GNSP15586 552 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 CD44P16070 742 aaKnown RBP12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 BRD2P25440 801 aaKnown RBP12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 TPMTP51580 245 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 COPAP53621 1224 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 DAOAP59103 153 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 SIM1P81133 766 aaPredicted RBP12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 STIM1Q13586 685 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 E2F5Q15329 346 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 CCDC40Q4G0X9 1142 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 MSANTD2Q6P1R3 559 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 LCLAT1Q6UWP7 414 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 SCML4Q8N228 414 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 KAT5Q92993 513 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 SIPA1Q96FS4 1042 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 CEP63Q96MT8 703 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 TIGD1Q96MW7 591 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 ZSWIM1Q9BR11 485 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 GTPBP4Q9BZE4 634 aaKnown RBP12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 ABCC13Q9NSE7 274 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 DNAAF2Q9NVR5 837 aaKnown RBP12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 HOOK1Q9UJC3 728 aaKnown RBP12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 STOML2Q9UJZ1 356 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 MAN1B1Q9UKM7 699 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 KIAA1257Q9ULG3 409 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 PCDHB4Q9Y5E5 795 aa12.04□□□□□ -0.48
HMGCS1-204ENST00000507293 A0A1B0GTW7 788 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 RNF225M0QZC1 329 aaPredicted RBP12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 TIMM44O43615 452 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 GABBR2O75899 941 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 LATS1O95835 1130 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 CALCAP01258 141 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 IGLV3-19P01714 112 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 ACADMP11310 421 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 HLA-FP30511 346 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 SGSHP51688 502 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 ZNF445P59923 1031 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 FAM193AP78312 1265 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 GRIK2Q13002 908 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 NUMA1Q14980 2115 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 FNDC3BQ53EP0 1204 aaKnown RBP12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 ADGRF1Q5T601 910 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 DCAF12L1Q5VU92 463 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 CHST9Q7L1S5 443 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 PPM1KQ8N3J5 372 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 ZCCHC9Q8N567 271 aaKnown RBP12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 CADM4Q8NFZ8 388 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 WFIKKN2Q8TEU8 576 aa12.03□□□□□ -0.48
HMGCS1-204ENST00000507293 CYB5D2Q8WUJ1 264 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms