RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 CCNG1P51959 295 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 CLNS1AP54105 237 aaKnown RBP10.17□□□□□ -0.78
CLIP1-204ENST00000501271 TMPRSS15P98073 1019 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 OCRLQ01968 901 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 ADIGQ0VDE8 80 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 GRB14Q14449 540 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 CHI3L2Q15782 390 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 C9orf131Q5VYM1 1079 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 STRADAQ7RTN6 431 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 KIRREL3Q8IZU9 778 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 DEFB106AQ8N104 65 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 NDUFAF2Q8N183 169 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 ZC3H15Q8WU90 426 aaKnown RBP10.17□□□□□ -0.78
CLIP1-204ENST00000501271 E2F7Q96AV8 911 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 NSL1Q96IY1 281 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 MS4A4AQ96JQ5 239 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 C7orf26Q96N11 449 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 SPATA13Q96N96 652 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 NUDCD1Q96RS6 583 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 BTBD10Q9BSF8 475 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 C20orf27Q9GZN8 174 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 SNX25Q9H3E2 840 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 ARHGEF4Q9NR80 690 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 MOCS1Q9NZB8 636 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 ARMCX1Q9P291 453 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 PIN4Q9Y237 131 aaKnown RBP10.17□□□□□ -0.78
CLIP1-204ENST00000501271 DOCK3Q8IZD9 2030 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 RRN3P2A6NIE6 340 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 H0Y3Z8 333 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 I3L4J1 428 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 ECM2O94769 699 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-204ENST00000501271 TOMM70O94826 608 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 CYP2C9P11712 490 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 ACADSBP45954 432 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 WASHC2DQ5SRD0 308 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 RINLQ6ZS11 566 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 PIGZQ86VD9 579 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 OSTM1Q86WC4 334 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 ARID3BQ8IVW6 561 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-204ENST00000501271 ADGRF2Q8IZF7 708 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.17□□□□□ -0.78
CLIP1-204ENST00000501271 PDCD7Q8N8D1 485 aaKnown RBP10.17□□□□□ -0.78
CLIP1-204ENST00000501271 APPL2Q8NEU8 664 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 NPLOC4Q8TAT6 608 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 APBB2Q92870 758 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 FAM149B1Q96BN6 582 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 HSFY1Q96LI6 401 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 ZNF560Q96MR9 790 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 TINF2Q9BSI4 451 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 GDAP2Q9NXN4 497 aa10.17□□□□□ -0.78
CLIP1-204ENST00000501271 SYNJ2BP-COX16A0A087WUM0 186 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 CLDN5O00501 218 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 BEST1O76090 585 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 F2P00734 622 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 CD4P01730 458 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 CRHR1P34998 444 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 ARL4AP40617 200 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 SLC25A52Q3SY17 297 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 STEAP4Q687X5 459 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 CASC4Q6P4E1 433 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 DSTYKQ6XUX3 929 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 C4orf50Q6ZRC1 276 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 ZCCHC23Q6ZST2 131 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 LIMS2Q7Z4I7 341 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 NUDCD3Q8IVD9 361 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 ENDOVQ8N8Q3 282 aaKnown RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 COLGALT1Q8NBJ5 622 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 DNAJB3Q8WWF6 145 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 BRI3BPQ8WY22 251 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 LENG1Q96BZ8 264 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 ABHD16BQ9H3Z7 469 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 COX16Q9P0S2 106 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 MORF4L1Q9UBU8 362 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 MARCOQ9UEW3 520 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 NRCAMQ92823 1304 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 CCL15-CCL14A0A0B4J2E2 113 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 SMIM35A0A1B0GVV1 85 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 MBLAC1A4D2B0 266 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 HACD1B0YJ81 288 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 RNF103O00237 685 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 XPO1O14980 1071 aaKnown RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 GSC2O15499 205 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 DYNC1LI2O43237 492 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 DAB1O75553 588 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 ALDH1A2O94788 518 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 BPGMP07738 259 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 KITP10721 976 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 ACAT1P24752 427 aaKnown RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 TAF6P49848 677 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 SERPINB9P50453 376 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 SESN2P58004 480 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 NIPAL4Q0D2K0 466 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 AP1B1Q10567 949 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 KRT72Q14CN4 511 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 SMAD1Q15797 465 aaKnown RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 CCL15Q16663 113 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 DCAF6Q58WW2 860 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 EFHC1Q5JVL4 640 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 UBXN11Q5T124 520 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms