RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 GLIS1Q8NBF1 620 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PPTC7Q8NI37 304 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CKAP2Q8WWK9 683 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EXT2Q93063 718 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 C12orf65Q9H3J6 166 aaKnown RBP11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 XPO1O14980 1071 aaKnown RBP11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SPTLC1O15269 473 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RIPK2O43353 540 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PAEPP09466 180 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 AKR1A1P14550 325 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EEF1DP29692 281 aaKnown RBP11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ETFBP38117 255 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MAP3K10Q02779 954 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DMPKQ09013 629 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 BMPR2Q13873 1038 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FAM110CQ1W6H9 321 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PARP6Q2NL67 630 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DNAL1Q4LDG9 190 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PMF1Q6P1K2 205 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LRRC8BQ6P9F7 803 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PIGWQ7Z7B1 504 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZNF554Q86TJ5 538 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RBM12BQ8IXT5 1001 aaKnown RBP11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DEFB106AQ8N104 65 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PABPC5Q96DU9 382 aaKnown RBP11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PTPN18Q99952 460 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MAGEB5Q9BZ81 275 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TMPRSS4Q9NRS4 437 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TRMT13Q9NUP7 481 aaKnown RBP11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SENP1Q9P0U3 644 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 THSD7AQ9UPZ6 1657 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 A0A1B0GVG6 124 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LSM1O15116 133 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 NDUFV1P49821 464 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TSPY1Q01534 308 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PRKCZQ05513 592 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SNX17Q15036 470 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RARS2Q5T160 578 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MROH9Q5TGP6 573 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RNF135Q8IUD6 432 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 C12orf56Q8IXR9 622 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ERLEC1Q96DZ1 483 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SCYL1Q96KG9 808 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 B3GALT6Q96L58 329 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 BTBD10Q9BSF8 475 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 VPS11Q9H270 941 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZNF212Q9UDV6 495 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SKIV2L2P42285 1042 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ALDH18A1P54886 795 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 C1QBPQ07021 282 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 AUHQ13825 339 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FASTKD3Q14CZ7 662 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MTFR1Q15390 333 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EFHC2Q5JST6 749 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 BTBD8Q5XKL5 378 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 B3GNT6Q6ZMB0 384 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ILDR2Q71H61 639 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PATL1Q86TB9 770 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KIAA2013Q8IYS2 634 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CCT7Q99832 543 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KLC2Q9H0B6 622 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ARHGEF3Q9NR81 526 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 STAP1Q9ULZ2 295 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZC3H4Q9UPT8 1303 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SMIM28A0A1B0GU29 152 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CNMDO75829 334 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CYP1A2P05177 515 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CREB1P16220 341 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TPI1P60174 286 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TBL3Q12788 808 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GSTA3Q16772 222 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RNF43Q68DV7 783 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TFAP2DQ7Z6R9 452 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PIGZQ86VD9 579 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SCUBE1Q8IWY4 988 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SLC25A41Q8N5S1 370 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DDHD1Q8NEL9 900 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SENP8Q96LD8 212 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PLEKHG4BQ96PX9 1271 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KATNAL1Q9BW62 490 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MRPL46Q9H2W6 279 aaKnown RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 NKX1-2Q9UD57 310 aaPredicted RBP11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZNF180Q9UJW8 692 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LTBP3Q9NS15 1303 aa11.07□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 IRF1P10914 325 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TPH1P17752 444 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ITIH2P19823 946 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MMP8P22894 467 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 UBAP2Q5T6F2 1119 aaKnown RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ATG16L1Q676U5 607 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GLB1LQ6UWU2 654 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EXOC3L1Q86VI1 746 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SPATA2LQ8IUW3 424 aaPredicted RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 WDR75Q8IWA0 830 aaKnown RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PYROXD2Q8N2H3 581 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FBXO36Q8NEA4 188 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ABHD8Q96I13 439 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KCNK16Q96T55 309 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 UBE2OQ9C0C9 1292 aaKnown RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CNTNAP2Q9UHC6 1331 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms