RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 HOXD9P28356 352 aaPredicted RBP25.68■■□□□ 1.7
UPF3A-209ENST00000492270 SLC6A4P31645 630 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 BPIFB4P59827 614 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 MPPE1Q53F39 396 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 FAM133BQ5BKY9 247 aaKnown RBP25.68■■□□□ 1.7
UPF3A-209ENST00000492270 ADGRF1Q5T601 910 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 NUGGCQ68CJ6 796 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 NADSYN1Q6IA69 706 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 RFWD3Q6PCD5 774 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 BEND5Q7L4P6 421 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 NOP9Q86U38 636 aaKnown RBP25.68■■□□□ 1.7
UPF3A-209ENST00000492270 KBTBD6Q86V97 674 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 ERLEC1Q96DZ1 483 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 INVSQ9Y283 1065 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 SIK3Q9Y2K2 1263 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 NUP205Q92621 2012 aa25.68■■□□□ 1.7
UPF3A-209ENST00000492270 ACSL4O60488 711 aa25.67■■□□□ 1.7
UPF3A-209ENST00000492270 GRAP2O75791 330 aa25.67■■□□□ 1.7
UPF3A-209ENST00000492270 POLR2FP61218 127 aaKnown RBP25.67■■□□□ 1.7
UPF3A-209ENST00000492270 APTXQ7Z2E3 356 aaKnown RBP25.67■■□□□ 1.7
UPF3A-209ENST00000492270 TRMT11Q7Z4G4 463 aaKnown RBP25.67■■□□□ 1.7
UPF3A-209ENST00000492270 UNC45BQ8IWX7 931 aa25.67■■□□□ 1.7
UPF3A-209ENST00000492270 KCNV2Q8TDN2 545 aa25.67■■□□□ 1.7
UPF3A-209ENST00000492270 DDX1Q92499 740 aaKnown RBP25.67■■□□□ 1.7
UPF3A-209ENST00000492270 SLC39A13Q96H72 371 aa25.67■■□□□ 1.7
UPF3A-209ENST00000492270 PARD6AQ9NPB6 346 aa25.67■■□□□ 1.7
UPF3A-209ENST00000492270 NLRC4Q9NPP4 1024 aa25.67■■□□□ 1.7
UPF3A-209ENST00000492270 TLR6Q9Y2C9 796 aa25.67■■□□□ 1.7
UPF3A-209ENST00000492270 CKAP5Q14008 2032 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 TCRBV21S2A2A0A5A6 115 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 LGALS16A8MUM7 142 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 ATP1A3P13637 1013 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 HOXB2P14652 356 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 NTSR1P30989 418 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 NNTQ13423 1086 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 SYCP1Q15431 976 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 OR6B2Q6IFH4 312 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 OLFML1Q6UWY5 402 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 CHPFQ8IZ52 775 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 DEFB106AQ8N104 65 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 ANKRD20A12PQ8NF67 263 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 HMGB4Q8WW32 186 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 NOX5Q96PH1 765 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 TRIM62Q9BVG3 475 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 PDCL3Q9H2J4 239 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 POLMQ9NP87 494 aaPredicted RBP25.66■■□□□ 1.7
UPF3A-209ENST00000492270 CACNA2D2Q9NY47 1150 aa25.66■■□□□ 1.7
UPF3A-209ENST00000492270 TNRC6BQ9UPQ9 1833 aaKnown RBP25.65■■□□□ 1.7
UPF3A-209ENST00000492270 IRAK2O43187 625 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 GFPT2O94808 682 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 TRUB2O95900 331 aaKnown RBP25.65■■□□□ 1.7
UPF3A-209ENST00000492270 MOCS2O96007 188 aaPredicted RBP25.65■■□□□ 1.7
UPF3A-209ENST00000492270 IGLV3-25P01717 112 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 CDK11BP21127 795 aaKnown RBP25.65■■□□□ 1.7
UPF3A-209ENST00000492270 TGM1P22735 817 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 SLC11A2P49281 568 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 SPEM2Q0P670 501 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 DCAF6Q58WW2 860 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 CACNA2D4Q7Z3S7 1137 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 ANKS1BQ7Z6G8 1248 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 EPS8L1Q8TE68 723 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 TMA16Q96EY4 203 aaKnown RBP25.65■■□□□ 1.7
UPF3A-209ENST00000492270 MYEOVQ96EZ4 313 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 PRICKLE1Q96MT3 831 aaPredicted RBP25.65■■□□□ 1.7
UPF3A-209ENST00000492270 SLC2A13Q96QE2 648 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 XPO7Q9UIA9 1087 aaKnown RBP25.65■■□□□ 1.7
UPF3A-209ENST00000492270 CEP83Q9Y592 693 aa25.65■■□□□ 1.7
UPF3A-209ENST00000492270 A0A1W2PQF6 199 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 WASH3PC4AMC7 463 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 ALDH1A2O94788 518 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 RETP07949 1114 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 MMEP08473 750 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 CDH5P33151 784 aaPredicted RBP25.64■■□□□ 1.7
UPF3A-209ENST00000492270 JAM2P57087 298 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 ZNF445P59923 1031 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 EFHC1Q5JVL4 640 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 PIK3R6Q5UE93 754 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 TMEM215Q68D42 235 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 TMEM35BQ8NCS4 154 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 WFDC5Q8TCV5 224 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 IPO4Q8TEX9 1081 aaKnown RBP25.64■■□□□ 1.7
UPF3A-209ENST00000492270 SLC20A1Q8WUM9 679 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 SLC2A11Q9BYW1 496 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 DUSP15Q9H1R2 295 aaPredicted RBP25.64■■□□□ 1.7
UPF3A-209ENST00000492270 SYNCQ9H7C4 482 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 ASNSD1Q9NWL6 643 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 BCCIPQ9P287 314 aaKnown RBP eCLIP25.64■■□□□ 1.7
UPF3A-209ENST00000492270 RAD54BQ9Y620 910 aa25.64■■□□□ 1.7
UPF3A-209ENST00000492270 SYNJ2BP-COX16A0A087WUM0 186 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 TBL1XO60907 577 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 HSF2BPO75031 334 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 GLI1P08151 1106 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 HLA-FP30511 346 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 UBXN1Q04323 297 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 PLK5Q496M5 336 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 ZC3H12AQ5D1E8 599 aaKnown RBP25.63■■□□□ 1.69
UPF3A-209ENST00000492270 KIAA1211LQ6NV74 962 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 DHX40Q8IX18 779 aaKnown RBP25.63■■□□□ 1.69
UPF3A-209ENST00000492270 RLN3Q8WXF3 142 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 AZIN2Q96A70 460 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms