RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 CPXM2Q8N436 756 aa11.3□□□□□ -0.6
VPS13D-210ENST00000489961 CTNNBL1Q8WYA6 563 aaPredicted RBP11.3□□□□□ -0.6
VPS13D-210ENST00000489961 BTN2A3PQ96KV6 586 aa11.3□□□□□ -0.6
VPS13D-210ENST00000489961 THAP2Q9H0W7 228 aa11.3□□□□□ -0.6
VPS13D-210ENST00000489961 MFSD1Q9H3U5 465 aa11.3□□□□□ -0.6
VPS13D-210ENST00000489961 WDCPQ9H6R7 721 aa11.3□□□□□ -0.6
VPS13D-210ENST00000489961 SPHK2Q9NRA0 654 aa11.3□□□□□ -0.6
VPS13D-210ENST00000489961 SPTLC3Q9NUV7 552 aa11.3□□□□□ -0.6
VPS13D-210ENST00000489961 KRBA1A5PL33 1030 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 STK25O00506 426 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 ENDOD1O94919 500 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 IPO7O95373 1038 aaKnown RBP11.29□□□□□ -0.6
VPS13D-210ENST00000489961 TFE3P19532 575 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-210ENST00000489961 CTHP32929 405 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 GJA4P35212 333 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 CXCR3P49682 368 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 ZNF143P52747 638 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-210ENST00000489961 STARD6P59095 220 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 RPL7AP62424 266 aaKnown RBP11.29□□□□□ -0.6
VPS13D-210ENST00000489961 SPA17Q15506 151 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 C15orf59Q2T9L4 293 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-210ENST00000489961 ANO4Q32M45 955 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 IER5LQ5T953 404 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 OTUD1Q5VV17 481 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-210ENST00000489961 RHBDF2Q6PJF5 856 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 ZNF852Q6ZMS4 543 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 TPGS1Q6ZTW0 290 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 TMEM25Q86YD3 366 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 FAM217AQ8IXS0 508 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 FAM172AQ8WUF8 416 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 FAM3CQ92520 227 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 BAG1Q99933 345 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-210ENST00000489961 CNPY3Q9BT09 278 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 BBS2Q9BXC9 721 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 IRX2Q9BZI1 471 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-210ENST00000489961 EPHX3Q9H6B9 360 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 LUC7LQ9NQ29 371 aaKnown RBP11.29□□□□□ -0.6
VPS13D-210ENST00000489961 PIGVQ9NUD9 493 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 STOML2Q9UJZ1 356 aa11.29□□□□□ -0.6
VPS13D-210ENST00000489961 MRPS17Q9Y2R5 130 aaKnown RBP11.29□□□□□ -0.6
VPS13D-210ENST00000489961 MYOFQ9NZM1 2061 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 COL4A3Q01955 1670 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 TYW5A2RUC4 315 aaKnown RBP11.28□□□□□ -0.6
VPS13D-210ENST00000489961 TMEM191CA6NGB0 347 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 OTOL1A6NHN0 477 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-210ENST00000489961 KCNU1A8MYU2 1149 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 NEDD8-MDP1E9PL57 170 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 HOXC11O43248 304 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-210ENST00000489961 CCP110O43303 1012 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 CYP1A2P05177 515 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 TMEM253P0C7T8 217 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 PSMA2P25787 234 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 SOX9P48436 509 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 VCPP55072 806 aaKnown RBP11.28□□□□□ -0.6
VPS13D-210ENST00000489961 GSE1Q14687 1217 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 ARL13BQ3SXY8 428 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 MPPE1Q53F39 396 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 ACBD5Q5T8D3 534 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-210ENST00000489961 BNIPLQ7Z465 357 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 CHSY1Q86X52 802 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 FNIP1Q8TF40 1166 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 CENPIQ92674 756 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-210ENST00000489961 XPO6Q96QU8 1125 aaKnown RBP11.28□□□□□ -0.6
VPS13D-210ENST00000489961 NELL2Q99435 816 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 NCAPGQ9BPX3 1015 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 NUP85Q9BW27 656 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 ADAM33Q9BZ11 813 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 TKTL2Q9H0I9 626 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 TBC1D17Q9HA65 648 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 ARHGEF38Q9NXL2 777 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 MARK1Q9P0L2 795 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 CALCOCO1Q9P1Z2 691 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 CTTNBP2NLQ9P2B4 639 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 UVRAGQ9P2Y5 699 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 INTUQ9ULD6 942 aa11.28□□□□□ -0.6
VPS13D-210ENST00000489961 MIA3Q5JRA6 1907 aa11.27□□□□□ -0.6
VPS13D-210ENST00000489961 KANSL1LA0AUZ9 987 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 SOWAHDA6NJG2 315 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.27□□□□□ -0.61
VPS13D-210ENST00000489961 EIF3CLB5ME19 914 aaKnown RBP11.27□□□□□ -0.61
VPS13D-210ENST00000489961 F5H5T6 163 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 RNF8O76064 485 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 NDUFA10O95299 355 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 LCA5LO95447 670 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 TYRP14679 529 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 TACR2P21452 398 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 EIF2DP41214 584 aaKnown RBP11.27□□□□□ -0.61
VPS13D-210ENST00000489961 MAGEA1P43355 309 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 ATXN1P54253 815 aaKnown RBP11.27□□□□□ -0.61
VPS13D-210ENST00000489961 OGDHQ02218 1023 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 UBXN2BQ14CS0 331 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 PREPLQ4J6C6 727 aaPredicted RBP11.27□□□□□ -0.61
VPS13D-210ENST00000489961 FAM133BQ5BKY9 247 aaKnown RBP11.27□□□□□ -0.61
VPS13D-210ENST00000489961 SH3PXD2AQ5TCZ1 1133 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 RAP1GAP2Q684P5 730 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 NADSYN1Q6IA69 706 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 FAM131BQ86XD5 332 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 FLCNQ8NFG4 579 aa11.27□□□□□ -0.61
VPS13D-210ENST00000489961 ZNF564Q8TBZ8 553 aaPredicted RBP11.27□□□□□ -0.61
VPS13D-210ENST00000489961 DDI1Q8WTU0 396 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms